lineage | Count |
---|---|
76 | |
lineage4 | 49 |
lineage4.9;lineage2.1 | 1 |
lineage4.9 | 15 |
lineage4.2.1 | 1 |
lineage2.2.1 | 9 |
lineage2.2.1.1 | 2 |
lineage4.1 | 1 |
La2 | 1 |
lineage4.1.2 | 2 |
lineage4.8 | 2 |
lineage4.3.2.1 | 1 |
lineage2.2 | 2 |
La1 | 2 |
La1.8.1 | 2 |
lineage6.1.1 | 2 |
La1.3 | 3 |
lineage4.9;La1.3 | 1 |
lineage3 | 2 |
lineage3.1.2 | 1 |
lineage4.3.4 | 1 |
lineage4.1.2.1 | 1 |
lineage1.1.3.1 | 1 |
lineage6.3.1 | 1 |
lineage2 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.9;La3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 187 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045526 | HR-TB | None | SRR5341469 | Other | lineage4 | None | ERR2693257 | Other | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045503 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045399 | Other | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046362 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046460 | HR-TB | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046644 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR294266 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR323039 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | SRR8217918 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR323053 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1063857 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1035122 | Sensitive | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063896 | Sensitive | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283025 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283032 | HR-TB | None | ERR3283024 | Other | None | ERR373945 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR363456 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4024991 | Other | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797044 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797017 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797061 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4188247 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769408 | Other | La1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769555 | Other | La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4797474 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798504 | Other | lineage3 | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4798431 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR6358979 | Other | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6866022 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR9634265 | Sensitive | None | SRR24256310 | HR-TB | lineage4.1.2.1 | None | ERR736865 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119669 | HR-TB | None | ERR9786843 | Other | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | ERR987722 | HR-TB | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1172310 | HR-TB | None | SRR1173568 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1174897 | HR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR14801749 | Sensitive | None | SRR17832802 | HR-TB | lineage3 | None | SRR15368973 | Other | None | SRR19304036 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR25827682 | Other | None | SRR20969677 | HR-TB | lineage2 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26159043 | Other | lineage4.9 | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675234 | Other | None | ERR702405 | Sensitive | lineage2.1 | None | ERR176651 | HR-TB | None | SRR3675265 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | ERR181887 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR3675571 | HR-TB | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819462 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None |
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