Rv3696c - c.1113A>G
Drug resistance types
36 Sensitive
8 RR-TB
66 HR-TB
31 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
63 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 7 |
| lineage4.9 | 93 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.5 | 2 |
| lineage4.3.4.2.1 | 5 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 9 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage7 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.2.1 | 1 |
| La1.7;lineage4.9 | 5 |
| M.canetti;lineage4.9 | 2 |
| La1.8.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage1.1.1;lineage4 | 1 |
| lineage3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 3 | |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2 | 4 |
| lineage4.1.2.1 | 3 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.4.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4 | 2 |
| lineage1.1.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage6.1.1 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.3.4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| La3;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La2;lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 206 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969731 | Other | lineage2.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6045548 | Other | lineage4.9 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4811031 | Other | lineage4.5 | None | ERR9285904 | Sensitive | lineage4.3.4.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3283010 | Sensitive | La1.8.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR4769452 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341456 | Other | lineage4.9 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR212001 | HR-TB | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR11466014 | Sensitive | lineage4.3.4.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR4816091 | Sensitive | lineage4.3.4.2.1 | gb | SRR14066533 | RR-TB | lineage1.1.1 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR12708416 | Sensitive | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR6046046 | Other | lineage4.9 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR3283031 | Other | La3;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR3799304 | RR-TB | lineage6.1.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4812155 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR6046594 | Other | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR23339975 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR971389 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR987722 | MDR-TB | None | SRR28351554 | Other | La1.6;lineage4 | None | ERR752229 | Other | lineage4.5 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR6045217 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None |
|---|
