lineage | Count |
---|---|
lineage4.1 | 1 |
lineage4.1.1 | 2 |
51 | |
lineage4.3 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4 | 2 |
lineage2.2.1 | 6 |
lineage4.9 | 11 |
lineage4.1.2.1 | 11 |
lineage3 | 1 |
lineage5.2 | 2 |
lineage1.1 | 1 |
lineage2.2 | 4 |
lineage4.3.3 | 1 |
lineage3.1 | 2 |
La2 | 1 |
La1.8.1 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage2.2.2 | 1 |
La3 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.4.1 | 1 |
spoligotype | Count |
---|---|
None | 108 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675486 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR176751 | HR-TB | None | ERR176643 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675574 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR4821053 | Other | lineage3 | None | SRR6046066 | HR-TB | None | ERR278594 | HR-TB | None | SRR6044780 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR294248 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311081 | HR-TB | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311090 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR702406 | HR-TB | None | ERR6358837 | HR-TB | None | ERR702404 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR736867 | HR-TB | None | ERR736839 | Other | None | ERR8976043 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR13861305 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None |
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