Rv1908c - c.486G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
1 RR-TB
73 HR-TB
10 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
12 Other
lineage Counts
| lineage | Count |
|---|---|
| 9 | |
| lineage2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1 | 20 |
| lineage3 | 2 |
| lineage4.4.2 | 2 |
| lineage4.9 | 13 |
| lineage2.2.2 | 11 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2;lineage4.9 | 2 |
| lineage3.1.2.1 | 1 |
| lineage2.2.2;lineage4 | 4 |
| lineage2.1 | 2 |
| lineage2.2.2;lineage4.9 | 2 |
| lineage2.2.1;lineage2.2.2 | 5 |
| lineage4.5 | 5 |
| lineage2.1;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2;lineage4 | 2 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 111 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | SRR1049040 | HR-TB | lineage2 | None | ERR6358991 | HR-TB | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | ERR485006 | HR-TB | lineage4.9 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR12416824 | HR-TB | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR1048852 | HR-TB | lineage2.2;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2.1 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1049023 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR25628593 | MDR-TB | lineage4.5 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SRR25628596 | MDR-TB | lineage4.5 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | ERR234659 | Other | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4811142 | RR-TB | None | ERR1063846 | HR-TB | lineage4.9 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR702406 | Other | lineage2.1 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR987722 | MDR-TB | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | ERR3283042 | Other | lineage4.9 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | ERR6359066 | HR-TB | lineage4.9 | None |
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