Rv2245 - c.537C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
25 Sensitive
4 RR-TB
27 HR-TB
6 MDR-TB
0 Pre-XDR-TB
1 XDR-TB
45 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9 | 55 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.4.1 | 1 |
| La3;lineage4.9 | 8 |
| lineage4.9;lineage9 | 1 |
| lineage4.3.4 | 1 |
| lineage4.1.1.3 | 1 |
| lineage3 | 2 |
| lineage2.2.1 | 3 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.6.3;lineage4.9 | 3 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4 | 2 |
| La1.7;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage2.2.1.1 | 2 |
| La1.2.BCG | 1 |
| M.canetti;lineage4.9 | 2 |
| 1 | |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage4.8 | 1 |
| lineage4.4.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.1.2.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 108 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR29050859 | Other | lineage4.9 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR926164 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR6359082 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR161037 | Other | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR212123 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR29097037 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None |
|---|
