Rv0676c - c.2535C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
2 RR-TB
50 HR-TB
19 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.9 | 7 |
| La1.7.1 | 1 |
| lineage2.2.1 | 6 |
| lineage4.9 | 35 |
| lineage4.1.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage4.9;lineage7 | 2 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La1.7;lineage4.9 | 6 |
| La2;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 8 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage1.1.2 | 1 |
| 3 | |
| La1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.1 | 1 |
| lineage2.2.1.2 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage4.1.2 | 1 |
| lineage3 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage2.2 | 1 |
| La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811311 | Other | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | ERR11465579 | Sensitive | lineage4.3.4.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR29096882 | Sensitive | lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR29097004 | Other | lineage3 | None | SRR6045526 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None |
|---|
