Rv3596c - c.474C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
20 Sensitive
0 RR-TB
26 HR-TB
8 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
79 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.9 | 39 |
| 17 | |
| lineage4.9;lineage9 | 1 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 4 |
| lineage3 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 10 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.2.1 | 6 |
| lineage1.1.3 | 2 |
| lineage1.1.3;lineage4.2.2.2 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| lineage6.1.1 | 2 |
| lineage4.1.1.2 | 1 |
| lineage6 | 1 |
| lineage2.1 | 1 |
| lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.3 | 3 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage2.2.1.2 | 1 |
| La1.8.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage5.2 | 2 |
| lineage4.3.4.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 134 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786440 | Other | lineage4.1 | None | SRR3675236 | Other | None | SRR12416824 | HR-TB | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR7535086 | Other | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797070 | Other | lineage4.9 | None | ERR718380 | Sensitive | lineage1.2.1.2.1 | th | ERR9786642 | Other | lineage4.1.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR10808730 | Other | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6650417 | Other | lineage1.1.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6797373 | Sensitive | lineage1.1.3;lineage4.2.2.2 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR9787165 | Other | lineage6 | None | SRR17832802 | HR-TB | lineage3 | None | SRR29096873 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29096150 | Other | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR21711124 | Sensitive | lineage1.1.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR4800341 | Other | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR9786604 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR6789626 | Other | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4797201 | Other | None |
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