Rv0006 - c.372G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
2 RR-TB
19 HR-TB
7 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 26 |
| lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage3 | 2 |
| lineage2.2.1 | 4 |
| lineage4.8 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| 4 | |
| M.canetti;lineage2.2 | 2 |
| La3;lineage4.9 | 1 |
| lineage1.2.2.2 | 3 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.1 | 1 |
| lineage4.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2.1 | 4 |
| lineage6 | 1 |
| lineage4.3.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.3.4 | 1 |
| La1.8.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage6.3.1 | 1 |
| lineage4.4.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 81 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR9787197 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045555 | Other | lineage4.9 | None | ERR9786604 | Other | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR26112287 | Sensitive | lineage1.2.2.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4798099 | Other | lineage4.9 | None | SRR12882726 | Sensitive | lineage1.2.2.2 | None | SRR6046593 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4769452 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR28044973 | Sensitive | lineage1.2.2.2 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3797029 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1791747 | Other | La1.8.1 | None | SRR6045347 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR6866639 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR28351442 | HR-TB | lineage3.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None |
|---|
