ERR7362017
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11049830
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16157038
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4813141
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10869276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28888058
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796375
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798457
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR10380062
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR13266931
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266250
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13261150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799290
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4872138
|
MDR-TB
|
lineage5.2
|
None
|
SRR26937039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11349192
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28351362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068905
|
HR-TB
|
lineage3
|
None
|
ERR4799718
|
Pre-XDR-TB
|
lineage4.1.1.3
|
in
|
SRR1049070
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4798605
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8380939
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266747
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265727
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR28045569
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799988
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR8025476
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5866149
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799363
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266260
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4872089
|
MDR-TB
|
lineage5.2
|
None
|
ERR10762359
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR1664654
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4799637
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1048866
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR12072593
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827886
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR2383627
|
MDR-TB
|
lineage5.2
|
fr
|
SAMN02360595
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4799158
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175187
|
XDR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
SRR1049068
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2707015
|
MDR-TB
|
lineage5.2
|
cd
|
SRR5266544
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR16089539
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR10828205
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1049033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798383
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830961
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4831001
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR9119559
|
MDR-TB
|
lineage5.2
|
None
|
SRR27757530
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11049819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291299
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4800332
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6807699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799093
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799448
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827550
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1
|
None
|
ERR11773794
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827351
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
ERR4799830
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR234653
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR29231703
|
MDR-TB
|
lineage5.2
|
None
|
ERR4796635
|
Pre-XDR-TB
|
lineage4.1.1.3
|
in
|
ERR8025496
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8847013
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796938
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR1664644
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR5866148
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830913
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266996
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873421
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4800471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175197
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872167
|
MDR-TB
|
lineage5.2
|
None
|
ERR4796722
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13265070
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266231
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4796956
|
MDR-TB
|
lineage4.1.1.3
|
in
|
SRR25827436
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797998
|
Pre-XDR-TB
|
lineage4.1.1.3
|
in
|
ERR4872090
|
MDR-TB
|
lineage5.2
|
None
|
SRR22424728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013674
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21732571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024905
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4011122
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13262037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266333
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR25827677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797580
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265265
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR12420481
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827632
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
ERR13265950
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14520113
|
HR-TB
|
lineage1.1.1
|
None
|
SRR27757531
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
ERR2707097
|
MDR-TB
|
lineage5.2
|
cd
|
ERR4797334
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR18149463
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4799909
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830954
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4800504
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797896
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806881
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR13262011
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2510547
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4799222
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2706914
|
MDR-TB
|
lineage5.2
|
cd
|
ERR4799338
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR11662167
|
MDR-TB
|
lineage1.1.1
|
None
|
ERR4796761
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR3256109
|
Other
|
lineage1.2.1.2.1
|
ph
|
SRR25827488
|
MDR-TB
|
lineage1.2.2.2;lineage4.3.3
|
None
|
ERR4798453
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798811
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28339292
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR2024926
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29539642
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175193
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266285
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266598
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28239668
|
Sensitive
|
lineage4.3.3
|
None
|
ERR4798396
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9992754
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR21277050
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4798243
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR21277280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827513
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR10305663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800431
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR9971243
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13262062
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262157
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762353
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1048865
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4799681
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR2383626
|
MDR-TB
|
lineage5.2
|
fr
|
ERR4796793
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28170836
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1013675
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4797384
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261997
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3994123
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR9119496
|
MDR-TB
|
lineage5.2
|
None
|
ERR2707066
|
MDR-TB
|
lineage5.2
|
cd
|
SRR28045816
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4798728
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29053305
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR5709919
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4799900
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28714178
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827482
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4829057
|
HR-TB
|
lineage4.8
|
it
|
SRR29231833
|
MDR-TB
|
lineage5.2
|
None
|
SRR10040547
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR9119569
|
MDR-TB
|
lineage5.2
|
None
|
ERR4798668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798504
|
RR-TB
|
lineage3
|
None
|
ERR4799647
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7911290
|
MDR-TB
|
lineage2.1
|
vn
|
ERR688035
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR5709932
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4799875
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7516403
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181218
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827661
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR22175239
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4797111
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872123
|
MDR-TB
|
lineage5.2
|
None
|
ERR4797704
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22424726
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798604
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799082
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800212
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827487
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR1020014
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827717
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
ERR4798291
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800580
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR7911114
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
SRR28351283
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4830661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662663
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR1181219
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7362011
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13266241
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4798045
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3132287
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4872094
|
MDR-TB
|
lineage5.2
|
None
|
SRR2024881
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13265279
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13260858
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13265914
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR25827370
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4796794
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR9119499
|
MDR-TB
|
lineage5.2
|
None
|
SRR22424853
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799694
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797712
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4195394
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR25827884
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR2024999
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13266857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266934
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798806
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799432
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02360617
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR4798617
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798760
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796884
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR1049069
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4800267
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796894
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4872093
|
MDR-TB
|
lineage5.2
|
None
|
ERR5866150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830952
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798065
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6964542
|
MDR-TB
|
lineage3
|
None
|
ERR4799654
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR1049032
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774897
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1049072
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12072589
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827791
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798509
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
in
|
SRR28045949
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351354
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266391
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR28409566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774900
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351359
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045843
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2706910
|
MDR-TB
|
lineage5.2
|
cd
|
ERR13290918
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4797003
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797015
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29539020
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28393591
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR29772647
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29126670
|
HR-TB
|
lineage6.3.1
|
None
|
DRR130114
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119542
|
MDR-TB
|
lineage5.2
|
None
|
ERR9119483
|
Pre-XDR-TB
|
lineage5.2
|
None
|
SRR1183035
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6824461
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR25827397
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827704
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827479
|
XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR25827620
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1020013
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR15723151
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2706930
|
MDR-TB
|
lineage5.2
|
cd
|
SRR16370670
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798759
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22175257
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107239
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR27107261
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
DRR130069
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21732523
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4798622
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799212
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799508
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799887
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799945
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13265211
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR1035207
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR25827672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797213
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4872171
|
MDR-TB
|
lineage5.2
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR13266217
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4797622
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
in
|
ERR4797831
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799416
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266145
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9119495
|
MDR-TB
|
lineage5.2
|
None
|
ERR9992662
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799148
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR2024977
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4800441
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796698
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797858
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29273715
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4799309
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799216
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4822354
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR4797710
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830977
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799385
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28888076
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827601
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4872077
|
Pre-XDR-TB
|
lineage5.2
|
None
|
ERR4872157
|
MDR-TB
|
lineage5.2
|
None
|
SRR16156767
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29093303
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4798497
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11044701
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11082316
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22251534
|
HR-TB
|
lineage2.2.2
|
None
|
ERR4797549
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR11662633
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28858587
|
Sensitive
|
lineage3.1.2
|
None
|
DRR130195
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR2514595
|
Sensitive
|
lineage4.3.3
|
gb
|
ERR5918040
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR28888072
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR502929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28240008
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16089634
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR22175203
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796589
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798804
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119529
|
MDR-TB
|
lineage5.2
|
None
|
ERR4797997
|
Pre-XDR-TB
|
lineage4.1.1.3
|
in
|
ERR4798875
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799379
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11774899
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266500
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266375
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13265249
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13260968
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796999
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797697
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798208
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1013683
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4830953
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4800599
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR2024895
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR5817476
|
XDR-TB
|
lineage1.1.2
|
None
|
SRR2024936
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4781456
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797432
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799454
|
Pre-XDR-TB
|
lineage1.2.2.2
|
in
|
SRR29231726
|
MDR-TB
|
lineage5.2
|
None
|
ERR13265158
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266296
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR25827744
|
Pre-XDR-TB
|
lineage1.1.3.1;lineage2.2.1
|
None
|
SAMN02360616
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR25827435
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798349
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799870
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR502894
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797971
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13258448
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799229
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798479
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1664619
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR9121469
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4796525
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6824505
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SAMN02585969
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR10341356
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799239
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799285
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799288
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR10828195
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1213835
|
HR-TB
|
lineage2.2.1
|
kr
|
SRR6356965
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420328
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
ERR9992890
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1049073
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827769
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR13265932
|
HR-TB
|
lineage2.2.1.2
|
None
|
SAMN02360562
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4831014
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13266012
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4797994
|
Pre-XDR-TB
|
lineage2.2.1.2;lineage4.1.1.3
|
in
|
ERR11774895
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4820276
|
HR-TB
|
lineage3.1.2
|
gb
|
ERR4796746
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02398714
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
ERR4798110
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5918119
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR6964549
|
MDR-TB
|
lineage3
|
None
|
ERR4800524
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799152
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22175208
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827643
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR9119500
|
MDR-TB
|
lineage5.2
|
None
|
ERR11775744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28467020
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28045908
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13285906
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4828791
|
HR-TB
|
lineage3
|
None
|
SRR30182707
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4796434
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796798
|
MDR-TB
|
lineage4.1.1.3
|
in
|
ERR4796939
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797081
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797390
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799139
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR5864868
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827745
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
None
|
ERR13266929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290868
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797579
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265611
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266381
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13260244
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR21887776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797269
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799674
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800321
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR10869258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5709794
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4796787
|
MDR-TB
|
lineage1.2.2.2;lineage3;lineage4.4.1.1
|
in
|
ERR4796973
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799526
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799570
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR13245253
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827510
|
XDR-TB
|
lineage2.2.1.2
|
None
|
ERR13258429
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267048
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR17657937
|
HR-TB
|
lineage2.2.1
|
None
|
ERR12117907
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR15368852
|
MDR-TB
|
lineage4.2.2
|
None
|
DRR130150
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR13291064
|
HR-TB
|
lineage2.1
|
None
|
ERR13265548
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR25827740
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
SRR29772437
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800276
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR1035096
|
Pre-XDR-TB
|
lineage1.1.1.1
|
vn
|
ERR4800619
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799789
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21887687
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119567
|
MDR-TB
|
lineage5.2
|
None
|
ERR4799361
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR2024928
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4798564
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175191
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827350
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798762
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799219
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798292
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02360598
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
SRR1013638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261342
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709889
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4799902
|
MDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR29093480
|
XDR-TB
|
lineage1.2.2.2
|
None
|
SRR1013566
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4797539
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR21732277
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR4799330
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1144766
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831262
|
XDR-TB
|
lineage2.2.1
|
de
|
SRR2024911
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR26331611
|
Sensitive
|
lineage4.9
|
None
|
SRR28351230
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801853
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180258
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11044053
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093953
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12328164
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4799471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175247
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798355
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR27107279
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16156789
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR28351319
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800293
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827490
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799218
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR13120448
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
ERR4799001
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
ERR4796702
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797501
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796984
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5758368
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025681
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025623
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9119627
|
MDR-TB
|
lineage5.2
|
None
|
SRR2024906
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR21732689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351272
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28240230
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28923835
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045927
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773785
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045543
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28339291
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR13266665
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266981
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351485
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827446
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1034603
|
Pre-XDR-TB
|
lineage4.1.1.3
|
pk
|
SRR28046342
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR28888073
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888074
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR27757529
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888057
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5918039
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR1013639
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827547
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR275199
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR8651579
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13290866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291216
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29440807
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR13265735
|
HR-TB
|
lineage2.2.1.2
|
None
|
SRR16157037
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR27757532
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266528
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4830662
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4872233
|
MDR-TB
|
lineage5.2
|
None
|
SRR1049071
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093889
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093944
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265154
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13265632
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266655
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013682
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR11662588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6964506
|
MDR-TB
|
lineage3
|
None
|
ERR4797973
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13265970
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266367
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR13266451
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024884
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4800557
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2
|
in
|
SAMN02360618
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
DRR130178
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|