Rv2754c - c.-4C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
1 RR-TB
62 HR-TB
110 MDR-TB
362 Pre-XDR-TB
64 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 368 |
| lineage5.2 | 36 |
| lineage4.4.1.1 | 3 |
| lineage2.2.2 | 25 |
| lineage1.2.2.2 | 10 |
| lineage4.3.3 | 15 |
| lineage1.2.1.2.1 | 3 |
| lineage4.1.1.3 | 17 |
| lineage1.2.2.2;lineage4.3.3 | 1 |
| lineage2.2.1.2 | 45 |
| lineage2.2.1;lineage3 | 8 |
| lineage4.2.1 | 5 |
| lineage4.4.2 | 5 |
| lineage4.8 | 2 |
| lineage3 | 8 |
| lineage2.2.1.1 | 3 |
| lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.1.1.3 | 1 |
| lineage4.3.2 | 2 |
| lineage4.3.4.2 | 5 |
| lineage4.5 | 1 |
| lineage1.1.2;lineage2.2.1 | 3 |
| lineage4.2.2 | 5 |
| lineage1.1.2 | 1 |
| lineage2.2.1;lineage3.1.2 | 3 |
| lineage6.3.1 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 4 |
| lineage1.2.2.2;lineage4 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.2.2.2;lineage3;lineage4.4.1.1 | 1 |
| lineage4.9 | 5 |
| lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage1.1.1 | 2 |
| lineage3.1.2 | 2 |
| lineage2.2.1.2;lineage3 | 1 |
| lineage2.2.1.1;lineage3;lineage4 | 2 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage2.2.1;lineage4.1.2 | 1 |
| lineage2.2.1.2;lineage4.1.1.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage2.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 606 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR22175197 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797111 | Pre-XDR-TB | lineage2.2.1 | in | ERR9992662 | XDR-TB | lineage2.2.1 | None | ERR4872167 | MDR-TB | lineage5.2 | None | ERR9992890 | MDR-TB | lineage4.4.1.1 | None | ERR4799222 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013674 | Pre-XDR-TB | lineage2.2.2 | None | ERR4872157 | MDR-TB | lineage5.2 | None | SRR16156767 | MDR-TB | lineage1.2.2.2 | None | ERR5918119 | Pre-XDR-TB | lineage4.3.3 | za | SRR25827677 | Pre-XDR-TB | lineage2.2.1 | None | ERR3256109 | Other | lineage1.2.1.2.1 | ph | ERR11044701 | XDR-TB | lineage2.2.1 | None | ERR13266747 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806881 | MDR-TB | lineage1.2.2.2 | None | SRR16089539 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR25827488 | MDR-TB | lineage1.2.2.2;lineage4.3.3 | None | SRR28045569 | MDR-TB | lineage2.2.1 | None | SRR28046342 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13266296 | HR-TB | lineage2.2.1.2 | None | SRR28239668 | Sensitive | lineage4.3.3 | None | ERR9992754 | XDR-TB | lineage2.2.2 | None | SRR21277050 | HR-TB | lineage2.2.1 | None | SRR21277280 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827513 | XDR-TB | lineage2.2.1;lineage3 | None | SRR10305663 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762353 | Pre-XDR-TB | lineage4.2.1 | None | ERR13290868 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | ERR13284000 | XDR-TB | lineage2.2.1 | None | ERR13266718 | MDR-TB | lineage2.2.1 | None | SRR29093480 | XDR-TB | lineage1.2.2.2 | None | SRR28170836 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1013675 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827886 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR13261975 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266540 | Pre-XDR-TB | lineage2.2.1 | None | ERR3994123 | HR-TB | lineage2.2.1.2 | None | ERR9119496 | MDR-TB | lineage5.2 | None | SRR10040547 | MDR-TB | lineage4.4.2 | None | ERR13266667 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119569 | MDR-TB | lineage5.2 | None | ERR3639748 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013683 | Pre-XDR-TB | lineage2.2.2 | None | ERR13266231 | HR-TB | lineage2.2.1.2 | None | ERR13194022 | Pre-XDR-TB | lineage2.2.2 | None | ERR13266391 | HR-TB | lineage2.2.1.2 | None | ERR688035 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29273715 | Pre-XDR-TB | lineage4.8 | None | SRR29093833 | MDR-TB | lineage1.2.2.2 | None | ERR4798504 | RR-TB | lineage3 | None | SRR1049068 | Pre-XDR-TB | lineage2.2.2 | None | ERR13266859 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | ERR13266327 | HR-TB | lineage2.2.1.2 | None | SRR7516403 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR21277264 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872123 | MDR-TB | lineage5.2 | None | ERR4781456 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13267071 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424726 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288921 | Pre-XDR-TB | lineage4.3.3 | None | ERR13261342 | MDR-TB | lineage2.2.1 | None | SRR25827744 | Pre-XDR-TB | lineage1.1.3.1;lineage2.2.1 | None | SRR28240008 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049819 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662663 | MDR-TB | lineage2.2.1.2 | None | SRR1181219 | Pre-XDR-TB | lineage4.3.3 | None | ERR7362011 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13262116 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291299 | HR-TB | lineage2.2.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR25827435 | XDR-TB | lineage2.2.1.1 | None | SRR25827764 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261499 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827351 | Pre-XDR-TB | lineage2.2.1;lineage4.1.1.3 | None | SRR25827397 | XDR-TB | lineage2.2.1 | None | ERR7361987 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4799789 | Pre-XDR-TB | lineage2.2.1 | None | SRR21887687 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231833 | MDR-TB | lineage5.2 | None | ERR13262002 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260244 | MDR-TB | lineage4.3.2 | None | SRR22424853 | MDR-TB | lineage2.2.1 | None | SRR22175191 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827299 | MDR-TB | lineage2.2.1 | None | SRR10341356 | Pre-XDR-TB | lineage2.2.1 | None | SRR10828195 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013638 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231729 | MDR-TB | lineage5.2 | None | SRR12420328 | MDR-TB | lineage2.2.1 | None | SRR6964542 | MDR-TB | lineage3 | None | SRR29772437 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827884 | XDR-TB | lineage2.2.1 | None | ERR4798622 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797973 | Pre-XDR-TB | lineage2.2.1 | in | ERR275199 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4796375 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796525 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796722 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798804 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797213 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798762 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797269 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799212 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799187 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798457 | XDR-TB | lineage2.2.1 | in | ERR4797384 | Pre-XDR-TB | lineage2.2.1 | in | SRR29772647 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799239 | MDR-TB | lineage2.2.1 | in | ERR4799290 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799416 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799432 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799454 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR4799448 | XDR-TB | lineage2.2.1 | in | ERR4799471 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799082 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799219 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799216 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799229 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797697 | MDR-TB | lineage2.2.1 | in | ERR4797712 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799093 | Pre-XDR-TB | lineage2.2.1 | in | SRR28351230 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797896 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799158 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800276 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800287 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798065 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798045 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800504 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799285 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799288 | Pre-XDR-TB | lineage2.2.1 | in | ERR5866150 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799309 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798383 | Pre-XDR-TB | lineage2.2.1 | in | ERR12328164 | HR-TB | lineage2.2.1 | None | ERR4798453 | MDR-TB | lineage2.2.1 | in | SRR8651579 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1049072 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231703 | MDR-TB | lineage5.2 | None | SRR25827490 | XDR-TB | lineage2.2.1 | None | SRR12072589 | Pre-XDR-TB | lineage2.2.1 | None | SRR13120448 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013677 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290918 | Pre-XDR-TB | lineage4.5 | None | ERR1664619 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR8380939 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175208 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872090 | MDR-TB | lineage5.2 | None | SRR22424728 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732571 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011122 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827601 | XDR-TB | lineage2.2.1.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR28351362 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068905 | HR-TB | lineage3 | None | SRR1049070 | Pre-XDR-TB | lineage2.2.2 | None | SRR12420481 | MDR-TB | lineage2.2.1 | None | SRR25827632 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1 | None | ERR11082316 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251534 | HR-TB | lineage2.2.2 | None | SRR28351159 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265727 | HR-TB | lineage2.2.1.2 | None | SRR28888072 | XDR-TB | lineage2.2.1 | None | SRR22175193 | XDR-TB | lineage2.2.1 | None | SRR22175203 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797704 | MDR-TB | lineage2.2.1 | in | ERR13267110 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025476 | Pre-XDR-TB | lineage2.2.2 | None | ERR13264984 | HR-TB | lineage2.2.1.2 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | ERR13266528 | XDR-TB | lineage2.2.1 | None | ERR13261997 | Pre-XDR-TB | lineage2.2.1 | None | ERR13254143 | MDR-TB | lineage4.2.2 | None | ERR9119529 | MDR-TB | lineage5.2 | None | SRR29093780 | MDR-TB | lineage1.2.2.2 | None | SRR28714178 | XDR-TB | lineage2.2.1 | None | SRR29440807 | MDR-TB | lineage1.2.1.2.1 | None | SRR25827482 | XDR-TB | lineage2.2.1 | None | ERR13266500 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258448 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266375 | HR-TB | lineage2.2.1.2 | None | ERR13265265 | HR-TB | lineage2.2.1.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR22175187 | XDR-TB | lineage1.1.2;lineage2.2.1 | None | ERR9119499 | MDR-TB | lineage5.2 | None | SRR1181218 | Pre-XDR-TB | lineage4.3.3 | None | ERR13262157 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827661 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR5817476 | XDR-TB | lineage1.1.2 | None | SRR22175239 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR29093953 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827503 | Pre-XDR-TB | lineage2.2.1 | None | SRR29126670 | HR-TB | lineage6.3.1 | None | SRR25827487 | XDR-TB | lineage2.2.1;lineage3 | None | SRR28351283 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR9119559 | MDR-TB | lineage5.2 | None | SRR29231726 | MDR-TB | lineage5.2 | None | SRR27757530 | XDR-TB | lineage2.2.1 | None | SRR30182707 | HR-TB | lineage2.2.1.2 | None | ERR13262020 | XDR-TB | lineage2.2.1 | None | ERR9119567 | MDR-TB | lineage5.2 | None | SRR25827350 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR13267085 | Pre-XDR-TB | lineage2.2.1 | None | ERR9121469 | HR-TB | lineage2.2.1.2 | None | SRR29017676 | MDR-TB | lineage1.2.2.2;lineage4 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1049073 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266381 | HR-TB | lineage2.2.1.2 | None | SRR6964549 | MDR-TB | lineage3 | None | ERR13266477 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799902 | MDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR4195394 | HR-TB | lineage2.2.1.2 | None | ERR13266253 | HR-TB | lineage2.2.1.2 | None | ERR4797501 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799647 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797539 | MDR-TB | lineage2.2.1 | in | ERR4799674 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799694 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797580 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798479 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799870 | MDR-TB | lineage2.2.1 | in | ERR4799945 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266333 | HR-TB | lineage2.2.1.2 | None | ERR4799988 | Pre-XDR-TB | lineage2.2.1;lineage4 | in | ERR4800267 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798857 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800441 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798564 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797858 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800580 | MDR-TB | lineage2.2.1 | in | ERR4797084 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799148 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799139 | MDR-TB | lineage2.2.1 | in | ERR4799152 | MDR-TB | lineage2.2.1 | in | ERR4799338 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799335 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799361 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797334 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799385 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799526 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799570 | Pre-XDR-TB | lineage2.2.1;lineage3 | in | ERR4799654 | MDR-TB | lineage2.2.1 | in | ERR4799637 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799718 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4797549 | MDR-TB | lineage2.2.1 | in | ERR4799001 | Pre-XDR-TB | lineage2.2.1 | in | ERR13265070 | HR-TB | lineage2.2.1.2 | None | ERR13266506 | XDR-TB | lineage2.2.1 | None | ERR13266322 | HR-TB | lineage2.2.1.2 | None | ERR4822354 | MDR-TB | lineage4.2.2 | None | SRR14801853 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180258 | Pre-XDR-TB | lineage4.3.3 | None | ERR4797997 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4800321 | XDR-TB | lineage2.2.1 | in | ERR11774895 | XDR-TB | lineage2.2.1 | None | ERR4800332 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799218 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800431 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800524 | Pre-XDR-TB | lineage2.2.1 | in | ERR11044053 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265970 | HR-TB | lineage2.2.1.2 | None | ERR4799875 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798208 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799330 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799363 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796335 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799887 | Pre-XDR-TB | lineage2.2.1 | in | ERR13265548 | HR-TB | lineage2.2.1.2 | None | ERR4796793 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796787 | MDR-TB | lineage1.2.2.2;lineage3;lineage4.4.1.1 | in | ERR4796798 | MDR-TB | lineage4.1.1.3 | in | ERR4796973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796956 | MDR-TB | lineage4.1.1.3 | in | ERR13262037 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798811 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798806 | MDR-TB | lineage2.2.1 | in | SRR28339292 | Pre-XDR-TB | lineage4.9 | None | ERR4800212 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800599 | XDR-TB | lineage2.2.1 | in | SRR27107279 | Pre-XDR-TB | lineage4.3.3 | None | ERR13290866 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156789 | MDR-TB | lineage1.2.2.2 | None | SRR29772556 | Pre-XDR-TB | lineage2.2.1 | None | SRR28339291 | Pre-XDR-TB | lineage4.9 | None | ERR13265611 | HR-TB | lineage2.2.1.2 | None | ERR13262080 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR28351319 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360598 | Pre-XDR-TB | lineage2.2.1 | kr | SAMN02360617 | Pre-XDR-TB | lineage2.2.2 | kr | SAMN02360618 | Pre-XDR-TB | lineage2.2.1 | kr | SAMN02360616 | Pre-XDR-TB | lineage2.2.2 | kr | SRR1049032 | Pre-XDR-TB | lineage2.2.1 | None | ERR11774897 | XDR-TB | lineage2.2.1 | None | ERR1664654 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1664644 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR25827791 | Pre-XDR-TB | lineage2.2.1 | None | SRR1020014 | Pre-XDR-TB | lineage2.2.2 | None | SRR1020013 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025681 | Pre-XDR-TB | lineage2.2.2 | None | ERR9119627 | MDR-TB | lineage5.2 | None | SRR28045949 | Pre-XDR-TB | lineage2.2.1 | None | SRR28409566 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827446 | XDR-TB | lineage2.2.1 | None | ERR4830953 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830954 | Pre-XDR-TB | lineage2.2.1 | np | SRR2024895 | MDR-TB | lineage2.2.1 | cn | SRR2024884 | MDR-TB | lineage2.2.1 | cn | SRR2024881 | MDR-TB | lineage2.2.1 | cn | SRR2024905 | Pre-XDR-TB | lineage2.2.1 | cn | SRR2024911 | Pre-XDR-TB | lineage2.2.1 | cn | SRR2024926 | Pre-XDR-TB | lineage2.2.1 | cn | SRR2024936 | MDR-TB | lineage2.2.1 | cn | SRR2024999 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2706914 | MDR-TB | lineage5.2 | cd | SRR28393591 | MDR-TB | lineage4.3.2 | None | ERR2707066 | MDR-TB | lineage5.2 | cd | ERR4830661 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119542 | MDR-TB | lineage5.2 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR16157037 | MDR-TB | lineage1.2.2.2 | None | SRR27757532 | XDR-TB | lineage2.2.1 | None | SRR25827745 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2.1 | None | ERR4872233 | MDR-TB | lineage5.2 | None | SRR1049071 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827704 | XDR-TB | lineage2.2.1 | None | SRR5709932 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709919 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709794 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709889 | Pre-XDR-TB | lineage2.2.1 | th | SRR6824461 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824582 | MDR-TB | lineage2.2.2 | cn | SRR6824505 | Pre-XDR-TB | lineage2.2.1 | cn | SRR15723151 | XDR-TB | lineage2.2.1 | None | ERR13265154 | HR-TB | lineage2.2.1.2 | None | SRR25827436 | MDR-TB | lineage2.2.1 | None | SRR28888076 | XDR-TB | lineage2.2.1 | None | ERR4831262 | XDR-TB | lineage2.2.1 | de | SRR25827538 | Pre-XDR-TB | lineage2.2.1 | None | SRR14520113 | HR-TB | lineage1.1.1 | None | SRR27757531 | XDR-TB | lineage2.2.1 | None | SRR18149463 | HR-TB | lineage2.2.1.2 | None | ERR13262011 | XDR-TB | lineage2.2.1 | None | SRR11662167 | MDR-TB | lineage1.1.1 | None | SRR11662633 | MDR-TB | lineage2.2.1 | None | SRR28858587 | Sensitive | lineage3.1.2 | None | DRR130195 | MDR-TB | lineage4.2.2 | None | ERR13262062 | Pre-XDR-TB | lineage2.2.1 | None | SRR29053305 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13265796 | HR-TB | lineage2.2.1.2;lineage3 | None | ERR13261226 | Pre-XDR-TB | lineage2.2.1 | None | SRR16089634 | HR-TB | lineage2.2.1.2 | None | ERR13266978 | MDR-TB | lineage2.2.1 | None | ERR5866149 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266504 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267048 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971243 | Pre-XDR-TB | lineage4.3.3 | None | ERR13260968 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265158 | HR-TB | lineage2.2.1.2 | None | ERR13245563 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539020 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266649 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266012 | HR-TB | lineage2.2.1.2 | None | ERR4872089 | MDR-TB | lineage5.2 | None | ERR10762359 | Pre-XDR-TB | lineage4.2.1 | None | SRR12072593 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266665 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261101 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285906 | Pre-XDR-TB | lineage4.2.1 | None | SRR28351520 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045816 | Pre-XDR-TB | lineage3 | None | ERR13291216 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11774899 | XDR-TB | lineage2.2.1 | None | SRR29231691 | MDR-TB | lineage5.2 | None | ERR4798668 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266862 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872093 | MDR-TB | lineage5.2 | None | SRR29231505 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260858 | MDR-TB | lineage4.4.1.1 | None | ERR13265952 | HR-TB | lineage2.2.1.2 | None | ERR13265932 | HR-TB | lineage2.2.1.2 | None | ERR13266598 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013676 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266934 | Pre-XDR-TB | lineage2.2.1 | None | SRR10828205 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265213 | HR-TB | lineage2.2.1.2 | None | SRR1049033 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266858 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827717 | Pre-XDR-TB | lineage2.2.1.1;lineage3;lineage4 | None | ERR13266754 | MDR-TB | lineage2.2.1 | None | ERR13266241 | HR-TB | lineage2.2.1.2 | None | SRR29093303 | MDR-TB | lineage1.2.2.2 | None | ERR13266929 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132287 | HR-TB | lineage2.2.1 | None | ERR13265562 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR25827370 | MDR-TB | lineage2.2.1;lineage3 | None | ERR13285914 | Pre-XDR-TB | lineage4.2.1 | None | ERR13261395 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265279 | HR-TB | lineage2.2.1.2 | None | ERR13266857 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266367 | HR-TB | lineage2.2.1.2 | None | ERR13265950 | HR-TB | lineage2.2.1.2 | None | ERR13265735 | HR-TB | lineage2.2.1.2 | None | SRR29230795 | MDR-TB | lineage5.2 | None | ERR13266285 | HR-TB | lineage2.2.1.2 | None | ERR13261978 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827769 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR13265914 | HR-TB | lineage2.2.1.2 | None | SRR6964506 | MDR-TB | lineage3 | None | ERR13266981 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800557 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2 | in | ERR13266260 | HR-TB | lineage2.2.1.2 | None | SRR26331611 | Sensitive | lineage4.9 | None | ERR4796761 | MDR-TB | lineage2.2.1 | in | SRR29094051 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR29539642 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796938 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797081 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796589 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796635 | Pre-XDR-TB | lineage4.1.1.3 | in | SRR21732277 | Other | lineage1.2.1.2.1 | None | ERR4797390 | MDR-TB | lineage2.2.1 | in | ERR4797432 | MDR-TB | lineage2.2.1 | in | ERR4798728 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797579 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797710 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796794 | MDR-TB | lineage2.2.1 | in | ERR4797831 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796884 | MDR-TB | lineage2.2.1 | in | ERR4797994 | Pre-XDR-TB | lineage2.2.1.2;lineage4.1.1.3 | in | SRR1049069 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798110 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796939 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797015 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796999 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798291 | Pre-XDR-TB | lineage2.2.1 | in | ERR13265249 | HR-TB | lineage2.2.1.2 | None | ERR4798349 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798396 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798509 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2 | in | ERR4798497 | Pre-XDR-TB | lineage2.2.1 | in | SRR1144766 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796434 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798605 | XDR-TB | lineage2.2.1 | in | ERR4798604 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796702 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796698 | MDR-TB | lineage2.2.1 | in | ERR4796746 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799909 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796984 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175247 | XDR-TB | lineage2.2.1 | None | ERR13262158 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798759 | MDR-TB | lineage2.2.1 | in | SRR11662690 | HR-TB | lineage4.9 | None | SAMN02398714 | Pre-XDR-TB | lineage2.2.1 | kr | ERR4811493 | HR-TB | lineage4.9 | None | ERR5758368 | Pre-XDR-TB | lineage2.2.2 | None | SRR28351432 | Pre-XDR-TB | lineage2.2.1 | None | ERR11773785 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045543 | MDR-TB | lineage2.2.1 | None | SRR28351354 | XDR-TB | lineage2.2.1 | None | ERR1034603 | Pre-XDR-TB | lineage4.1.1.3 | pk | SRR28045562 | Pre-XDR-TB | lineage2.2.1 | None | SRR28888073 | XDR-TB | lineage2.2.1 | None | ERR7911114 | Pre-XDR-TB | lineage2.2.1 | vn | SRR25827547 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | ERR4830662 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830913 | Pre-XDR-TB | lineage2.2.1 | np | ERR5918039 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR5918040 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR502894 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830977 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831001 | Pre-XDR-TB | lineage2.2.1 | np | DRR130114 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827479 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR25827620 | XDR-TB | lineage2.2.1 | None | SRR28351567 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045924 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869258 | Pre-XDR-TB | lineage2.2.1 | None | SRR5266544 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2514595 | Sensitive | lineage4.3.3 | gb | SRR16370670 | Pre-XDR-TB | lineage2.2.1 | None | SRR27107239 | Pre-XDR-TB | lineage4.3.3 | None | SRR27107261 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR1035207 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR13265632 | HR-TB | lineage2.2.1.2 | None | ERR13266655 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035096 | Pre-XDR-TB | lineage1.1.1.1 | vn | SRR25827510 | XDR-TB | lineage2.2.1.2 | None | SAMN02585969 | Pre-XDR-TB | lineage4.3.3 | za | ERR2383627 | MDR-TB | lineage5.2 | fr | ERR12117907 | Pre-XDR-TB | lineage4.3.3 | None | SRR15368852 | MDR-TB | lineage4.2.2 | None | ERR13266451 | Pre-XDR-TB | lineage2.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | DRR130178 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772588 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119495 | MDR-TB | lineage5.2 | None | ERR1213835 | HR-TB | lineage2.2.1 | kr | SRR25827550 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1 | None | ERR11773794 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049830 | Pre-XDR-TB | lineage2.2.1 | None | SRR16157038 | MDR-TB | lineage1.2.2.2 | None | ERR4813141 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025496 | Pre-XDR-TB | lineage2.2.1 | None | SRR28888058 | XDR-TB | lineage2.2.1 | None | ERR5866148 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799958 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266996 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266250 | HR-TB | lineage2.2.1.2 | None | ERR13261150 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266484 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093889 | Pre-XDR-TB | lineage2.2.2 | None | SRR29093944 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827672 | Pre-XDR-TB | lineage2.2.1 | None | ERR2383626 | MDR-TB | lineage5.2 | fr | SRR17657937 | HR-TB | lineage2.2.1 | None | ERR4872171 | MDR-TB | lineage5.2 | None | DRR130150 | MDR-TB | lineage4.2.2 | None | ERR7362017 | XDR-TB | lineage2.2.1 | None | ERR4797003 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796894 | XDR-TB | lineage2.2.1 | in | ERR4797503 | Pre-XDR-TB | lineage2.2.1 | in | ERR1873421 | Pre-XDR-TB | lineage2.2.2 | None | ERR4797622 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1 | in | ERR4798355 | MDR-TB | lineage2.2.1 | in | ERR4872138 | MDR-TB | lineage5.2 | None | ERR4797998 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4797971 | XDR-TB | lineage2.2.1 | in | ERR4798292 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798243 | XDR-TB | lineage2.2.1 | in | SRR26937039 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798617 | XDR-TB | lineage2.2.1 | in | ERR4798760 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799830 | XDR-TB | lineage2.2.1 | in | ERR4800471 | Pre-XDR-TB | lineage2.2.1 | in | SRR11349192 | Pre-XDR-TB | lineage4.3.3 | None | ERR4799379 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799508 | XDR-TB | lineage2.2.1 | in | ERR4799900 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799681 | XDR-TB | lineage2.2.1 | in | ERR4800293 | Pre-XDR-TB | lineage2.2.1 | in | ERR8025623 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827643 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR21732689 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351272 | Pre-XDR-TB | lineage2.2.1 | None | ERR11775744 | Pre-XDR-TB | lineage2.2.1 | None | SRR28240230 | Pre-XDR-TB | lineage2.2.1 | None | SRR28923835 | MDR-TB | lineage2.2.1 | None | SRR28045927 | XDR-TB | lineage2.2.1 | None | SRR28467020 | Pre-XDR-TB | lineage2.2.2 | None | SRR28045908 | XDR-TB | lineage2.2.1 | None | SRR28351485 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351615 | Pre-XDR-TB | lineage2.2.1 | None | SRR28888074 | XDR-TB | lineage2.2.1 | None | SRR27757529 | XDR-TB | lineage2.2.1 | None | ERR11774900 | XDR-TB | lineage2.2.1 | None | SRR28888057 | XDR-TB | lineage2.2.1 | None | SRR28351359 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045843 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013639 | Pre-XDR-TB | lineage2.2.1 | None | SRR2024906 | MDR-TB | lineage2.2.1 | cn | ERR4828791 | HR-TB | lineage3 | None | SRR2024928 | MDR-TB | lineage2.2.1 | cn | ERR7911290 | MDR-TB | lineage2.1 | vn | SRR2024977 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2707015 | MDR-TB | lineage5.2 | cd | ERR2706930 | MDR-TB | lineage5.2 | cd | ERR2707097 | MDR-TB | lineage5.2 | cd | ERR2706910 | MDR-TB | lineage5.2 | cd | ERR4829057 | HR-TB | lineage4.8 | it | ERR4830952 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830961 | Pre-XDR-TB | lineage2.2.1 | np | ERR502929 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831014 | Pre-XDR-TB | lineage2.2.1 | np | ERR5864868 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183035 | Pre-XDR-TB | lineage4.3.3 | None | SRR21887776 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510547 | Pre-XDR-TB | lineage3 | None | ERR234653 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4820276 | HR-TB | lineage3.1.2 | gb | SRR22175257 | MDR-TB | lineage2.2.1 | None | ERR13245253 | XDR-TB | lineage2.2.1 | None | DRR130069 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796276 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732523 | HR-TB | lineage2.2.1 | None | SRR1013682 | Pre-XDR-TB | lineage2.2.2 | None | SRR11662588 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258429 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265211 | HR-TB | lineage2.2.1.2 | None | ERR13266217 | HR-TB | lineage2.2.1.2 | None | ERR13291064 | HR-TB | lineage2.1 | None | ERR13266145 | XDR-TB | lineage2.2.1 | None | SRR25827740 | Pre-XDR-TB | lineage2.2.1.1;lineage3;lineage4 | None | ERR4800619 | MDR-TB | lineage2.2.1 | None | SRR6807699 | MDR-TB | lineage2.2.1 | None | SRR8847013 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869276 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380062 | Pre-XDR-TB | lineage4.2.1 | None | ERR13266931 | MDR-TB | lineage2.2.1 | None | ERR4798875 | Pre-XDR-TB | lineage2.2.1 | in |
|---|
