Run ID: SRR5818419
Sample name:
Date: 18-08-2022 13:02:55
Number of reads: 813651
Percentage reads mapped: 99.55
Strain:
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472436 | n.591G>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472437 | n.592T>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472449 | n.604C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472450 | n.605A>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472451 | n.606C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472462 | n.617T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472473 | n.628G>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472474 | n.629C>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 0.98 |
ahpC | 2726184 | c.-9A>C | upstream_gene_variant | 0.4 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |