TB-Profiler result

Run: SRR5818419

Summary

Run ID: SRR5818419

Sample name:

Date: 18-08-2022 13:02:55

Number of reads: 813651

Percentage reads mapped: 99.55

Strain:

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.26
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.32
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.3
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.32
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.3
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.29
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.31
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.31
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.31
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.31
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.33
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.33
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.33
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.34
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.33
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.34
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.36
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.36
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.38
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.37
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.39
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.42
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.43
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.44
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.55
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.31
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.31
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.16
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.13
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 0.98
ahpC 2726184 c.-9A>C upstream_gene_variant 0.4
gid 4407588 c.615A>G synonymous_variant 1.0