ERR181887
|
Other
|
lineage4.9
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
SAMN02360571
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26159043
|
Other
|
lineage4.9
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119525
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SRR15014655
|
Other
|
M.canetti;lineage1
|
None
|
ERR3283020
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SAMN02360574
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR2041726
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1013608
|
Sensitive
|
lineage2.2.2
|
None
|
SRR5709967
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165699
|
Other
|
lineage4.9
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR8217918
|
HR-TB
|
lineage4.9
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
ERR3290633
|
Other
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
SRR1048853
|
HR-TB
|
lineage2;lineage4.9
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
SRR3675456
|
RR-TB
|
lineage4.9;lineage7
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
SRR7131023
|
Other
|
lineage4.1.2.1
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
SRR1013630
|
Pre-XDR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR4817069
|
RR-TB
|
|
None
|
SRR25827682
|
Other
|
|
None
|
ERR9787197
|
Other
|
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|
SRR1013634
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
ERR9787139
|
Other
|
lineage6.3.1
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR1013577
|
HR-TB
|
lineage2.2.2
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR1013598
|
Sensitive
|
lineage2.2.2;lineage4
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
SRR18003019
|
Other
|
lineage2.2.1
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR3797017
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
SRR1048994
|
HR-TB
|
lineage4.9
|
None
|
SRR3675231
|
MDR-TB
|
lineage4.9;lineage7
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SAMN02360581
|
HR-TB
|
lineage2.2.1
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
SRR25827497
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
SRR1048982
|
HR-TB
|
lineage2.2.1.1
|
None
|
SAMN02360595
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
ERR4818583
|
Other
|
lineage4.3.3
|
None
|
SRR1013617
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR1013554
|
MDR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
ERR4769436
|
Other
|
La1.3
|
None
|
ERR2693230
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1048975
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR736859
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
SAMN02360564
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR1165423
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
SRR1165584
|
Other
|
lineage4.1.2.1
|
None
|
ERR9786642
|
Other
|
lineage4.1.2.1
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR3675275
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
SAMN02360583
|
HR-TB
|
lineage2.2.2
|
None
|
ERR3797044
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR1184388
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1013601
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1183049
|
RR-TB
|
lineage2.2
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR1163221
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513259
|
Other
|
lineage3
|
None
|
SAMN02360556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4799547
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1184021
|
Sensitive
|
lineage4.9
|
None
|
SRR14782054
|
Other
|
lineage4.9
|
None
|
ERR9786526
|
Other
|
lineage4.1;lineage4.8
|
None
|
SAMN02360590
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
SRR1048869
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
SRR1049040
|
HR-TB
|
lineage2
|
None
|
ERR4816470
|
HR-TB
|
lineage3
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7496471
|
Sensitive
|
lineage4
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR1048998
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4820854
|
Other
|
lineage4.1.2.1
|
None
|
SRR1013584
|
HR-TB
|
lineage2.2.2
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
SRR1048870
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
SRR1049041
|
HR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
SRR1013629
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675541
|
Sensitive
|
lineage4.9
|
None
|
ERR11465232
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1013610
|
Sensitive
|
lineage4
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR14782405
|
HR-TB
|
lineage4.9
|
None
|
ERR11466499
|
Other
|
lineage4.3.4.1
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
ERR9787153
|
Other
|
lineage6.1.3
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR502532
|
Other
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR6044835
|
Other
|
lineage4.9
|
None
|
SAMN02414850
|
Other
|
lineage4.1.2.1
|
None
|
SRR21732954
|
Sensitive
|
lineage4.9
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR1013599
|
HR-TB
|
lineage2.2.1.1;lineage4
|
None
|
ERR7821163
|
Other
|
lineage2.2.1
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1049006
|
HR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
ERR4818110
|
Sensitive
|
lineage4.9
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1049023
|
HR-TB
|
lineage4.9
|
None
|
SRR1048966
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02360579
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
ERR212001
|
HR-TB
|
|
None
|
ERR752229
|
Other
|
lineage4.5
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
SRR1013602
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
SRR1013589
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR4817893
|
Other
|
La3;lineage4.8
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
SRR1048991
|
HR-TB
|
lineage2;lineage4.9
|
None
|
ERR161034
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3797067
|
Other
|
La1.8.1
|
None
|
SRR1173629
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1013612
|
Sensitive
|
lineage4.5
|
None
|
SRR26399973
|
Other
|
La3;lineage4.9
|
None
|
ERR2693245
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
ERR9117721
|
HR-TB
|
La3;lineage1.1.2
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|