Rv2428 - c.390G>C
Drug resistance types
21 Sensitive
2 RR-TB
38 HR-TB
8 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
16 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2;lineage4.9 | 1 |
| lineage4.9 | 41 |
| M.canetti;lineage2.1;lineage4.9 | 6 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 3 |
| lineage2.2.1.2 | 3 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.1.2.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 85 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769450 | Other | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1162864 | Other | lineage4.1.2.1 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR29097054 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR21689947 | Sensitive | lineage2.2.1.2 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR22251371 | Other | lineage2.2.1.2 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
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