lineage | Count |
---|---|
lineage4.1.2.1 | 9 |
lineage2.2.2 | 1 |
lineage4.9 | 16 |
lineage4.4.1.1 | 2 |
lineage4.5 | 1 |
lineage4.1.1.3 | 2 |
lineage1.2.1.2.1 | 1 |
lineage9;lineage3.1 | 1 |
36 | |
La1.8.1 | 2 |
lineage1.1.1.1 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage3 | 5 |
lineage4.3.4.2.1 | 2 |
lineage4;lineage1.1.2 | 1 |
lineage2.2.1 | 4 |
lineage4.2.2.2 | 1 |
lineage4.3.3 | 3 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.3.2 | 1 |
spoligotype | Count |
---|---|
None | 95 |
ID | Drug resistance | Lineage | Country iso2 | SRR1162740 | Other | lineage4.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR13861242 | Other | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861447 | RR-TB | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861575 | Other | lineage4.9 | None | SRR13861606 | Sensitive | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | SRR26399715 | HR-TB | lineage1.1.1.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675383 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675558 | HR-TB | None | SRR3675456 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816470 | Other | lineage3 | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275220 | Other | lineage3 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR5818702 | Sensitive | lineage4.2.2.2 | dj | ERR2517528 | Other | lineage3 | nl | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | ERR278594 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4821053 | Other | lineage3 | None | ERR2446144 | Other | lineage3 | nl | SRR6045952 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR323036 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323041 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR3468544 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283017 | HR-TB | None | ERR323063 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR387051 | HR-TB | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6358837 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None |
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