Rv0006 - c.2010C>T
Drug resistance types
23 Sensitive
3 RR-TB
68 HR-TB
5 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
47 Other
lineage Counts
| lineage | Count |
|---|---|
| 56 | |
| lineage4.9 | 38 |
| La1 | 1 |
| lineage4.5 | 1 |
| lineage4.9;lineage2.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4 | 19 |
| lineage4.3.2 | 1 |
| lineage4.1.2.1 | 10 |
| lineage4.4.1.1 | 2 |
| lineage4.1 | 2 |
| lineage9;lineage3.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.1.1 | 1 |
| lineage5.1.4 | 1 |
| lineage2.2.1 | 2 |
| lineage3 | 1 |
| lineage3.1 | 2 |
| lineage1.1 | 1 |
| lineage2.2 | 1 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 149 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4799025 | Pre-XDR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR8975789 | XDR-TB | lineage4.9;lineage2.2.2 | None | ERR4812155 | Sensitive | None | ERR6359070 | Other | lineage4.9 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR6866807 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR8976043 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861532 | Other | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861586 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR1640750 | HR-TB | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692818 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR3675482 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR1035239 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | SRR6325445 | HR-TB | None | SRR3675229 | Other | lineage4 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675383 | HR-TB | None | SRR3675387 | Sensitive | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675279 | Other | None | ERR4816964 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675547 | Other | lineage4.9 | None | SRR3675558 | HR-TB | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4818536 | Other | lineage4.9 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4819051 | Other | lineage4 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341456 | Other | None | SRR5341396 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR4821467 | RR-TB | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6044780 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046397 | Other | None | SRR6325448 | HR-TB | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR5311099 | HR-TB | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323055 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR11464977 | Sensitive | lineage4.9 | None | ERR3283028 | Other | None | ERR4821942 | Sensitive | lineage4.9 | gb | ERR3283017 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR4821555 | Sensitive | lineage4.9 | gb | ERR3283014 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR363456 | Sensitive | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4188350 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None |
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