Rv0005 - c.970C>T


Drug resistance types
4 Sensitive 8 RR-TB 53 HR-TB 27 MDR-TB 1 Pre-XDR-TB 1 XDR-TB 37 Other
lineage Counts
lineage Count
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage1.2.1.2.1 1
lineage2.2.1.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9 10
La3;M.canetti;lineage3.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.1.2.1 5
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 3
lineage2.1;lineage4.1.1.1;lineage6.3 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage4.9 26
M.canetti;lineage2.1;lineage4.9 9
lineage3.1;lineage9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La3;M.canetti;lineage2.1;lineage3.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.9 2
M.canetti;lineage4.9 1
M.canetti;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.2.2;lineage6.2 2
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 2
lineage2.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.2.1 1
La1.7.1;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage1.1 1
La1.2.BCG 1
M.canetti;lineage2.1 1
3
lineage2.2.1 3
La1.7.1 1
La3;M.canetti;lineage4.8;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage4.9;lineage9 1
lineage4.5 1
M.canetti;lineage2.1;lineage6.3 1
lineage5.2 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage3 1
lineage4.4.1.1 1
La1.6;lineage4 1
lineage2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.9 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4 1
lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 1
lineage4.1.1.3 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage1 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
lineage4 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 131
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR1180147 Other lineage2.2.1.1 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR3675243 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR1165506 Other lineage4.1.2.1 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1167055 Other lineage4.1.2.1 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797061 Other La1.6;La3;lineage4.9 None
SRR6045526 Other lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
ERR4797184 Sensitive lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675494 RR-TB lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR4798262 HR-TB La1.2.BCG None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2514692 Other None
ERR212001 HR-TB None
ERR2509673 Other lineage2.2.1 None
SRR6044815 Other lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR1640750 Other None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3275196 Other lineage2.2.1 nl
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181887 Other lineage4.9 None
SRR13861381 HR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR4872094 MDR-TB lineage5.2 None
ERR4816656 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR9119500 MDR-TB lineage5.2 None
SRR1173453 Other lineage4.4.1.1 None
SRR28351554 Sensitive La1.6;lineage4 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4819241 Other lineage4.9 None
ERR176651 Other lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4820773 HR-TB lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR5917710 Other lineage4.1.2.1 None
ERR161037 Other lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6511621 Sensitive lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4816478 HR-TB lineage4 None
SRR12416842 HR-TB lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR12416840 MDR-TB lineage4.9 None
ERR3797046 HR-TB lineage4.9 None