SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
ERR349330
|
Sensitive
|
lineage4.9
|
None
|
ERR363446
|
Sensitive
|
lineage4.9
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR1640750
|
Other
|
|
None
|
SRR3675545
|
Other
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR1034652
|
Other
|
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
SRR1180250
|
Other
|
lineage4.9
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
SRR3675270
|
Other
|
lineage4.9
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
ERR2693242
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR369158
|
Other
|
lineage4.9
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
SRR6046299
|
Other
|
lineage4.3.1;lineage4.9;lineage6
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675292
|
Sensitive
|
lineage4.9
|
None
|
SRR1166821
|
Other
|
lineage4.1.2.1
|
None
|
ERR363490
|
Sensitive
|
lineage4.9
|
None
|
ERR363479
|
Sensitive
|
lineage4.9
|
None
|
ERR4816551
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR13861153
|
Other
|
lineage4.9
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
ERR373945
|
Sensitive
|
lineage4.9
|
None
|
SRR1180148
|
Sensitive
|
lineage4.9
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
ERR6865502
|
Sensitive
|
lineage4
|
None
|
ERR3797019
|
Other
|
La1.8.1
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR363474
|
Sensitive
|
lineage4.9
|
None
|
ERR4769457
|
Other
|
lineage4.9
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
SRR6044876
|
Sensitive
|
lineage4.9
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045371
|
Other
|
lineage4.9
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
ERR363509
|
Sensitive
|
lineage4.9
|
None
|
ERR4816904
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR3675541
|
Sensitive
|
lineage4.9
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR369160
|
Sensitive
|
lineage4.9
|
None
|
ERR363445
|
Other
|
lineage4.9
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
ERR1034634
|
HR-TB
|
lineage4.9
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
SRR29097054
|
Sensitive
|
lineage4.9
|
None
|
ERR349266
|
Sensitive
|
lineage4.9
|
None
|
ERR373946
|
Sensitive
|
lineage4.9
|
None
|
SRR3675472
|
Sensitive
|
lineage4.9
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR349296
|
Sensitive
|
lineage4.9
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
SRR13861553
|
Other
|
lineage4.9
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR2509673
|
Other
|
lineage2.2.1
|
None
|
ERR349264
|
Sensitive
|
lineage4.9
|
None
|
ERR7911670
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
SRR17832802
|
HR-TB
|
lineage3
|
None
|
ERR4831545
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6045503
|
Sensitive
|
lineage4.9
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
ERR4819241
|
Other
|
lineage4.9
|
None
|
SRR13861510
|
Other
|
lineage4.9
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
ERR369162
|
Other
|
lineage4.9
|
None
|
ERR4816113
|
Sensitive
|
lineage4.1.1.1
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
ERR369163
|
Sensitive
|
lineage4.9
|
None
|
ERR1063896
|
Sensitive
|
|
None
|
ERR363498
|
Sensitive
|
lineage4.9
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4178309
|
Other
|
lineage4.1.2.1
|
None
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR363421
|
Sensitive
|
lineage4.9
|
None
|
SRR9971150
|
RR-TB
|
lineage4.8.1
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
ERR363437
|
Sensitive
|
lineage4.9
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR6046897
|
Sensitive
|
lineage4.9
|
None
|
SRR29097058
|
Other
|
lineage4.9
|
None
|
ERR4178226
|
Sensitive
|
lineage4
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
ERR6865513
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675209
|
Sensitive
|
lineage4.9
|
None
|
ERR349299
|
Other
|
lineage4.9
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
ERR2660539
|
Other
|
lineage4.9
|
None
|
SRR3675494
|
RR-TB
|
lineage4.9
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR373947
|
Other
|
lineage4.9
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
SRR29017081
|
Sensitive
|
lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
ERR363456
|
Sensitive
|
lineage4.9
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7240492
|
HR-TB
|
La1.7.1
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR28351455
|
Other
|
lineage3.1.2.1;lineage4
|
None
|
ERR363500
|
Sensitive
|
lineage4.9
|
None
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
ERR4798431
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
SRR3675506
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
SRR3675520
|
Other
|
La1.7.X-unk4;lineage4.9
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR2693228
|
RR-TB
|
lineage4.9
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR3675269
|
RR-TB
|
lineage4.9
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR349300
|
Sensitive
|
lineage4.9
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR349265
|
Other
|
lineage4.9
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
ERR363426
|
Sensitive
|
lineage4.9
|
None
|
SRR29096943
|
Sensitive
|
lineage3.1.2.1
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR363449
|
Sensitive
|
lineage4.9
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
ERR124636
|
Sensitive
|
lineage4.9
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709967
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3675260
|
Sensitive
|
lineage4.9
|
None
|
DRR188519
|
Other
|
lineage4.4.2
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
ERR363499
|
Sensitive
|
lineage4.9
|
None
|
ERR349298
|
Sensitive
|
lineage4.9
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
ERR212138
|
HR-TB
|
lineage4.9
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR363502
|
Other
|
lineage4.9
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
ERR363447
|
Other
|
lineage4.9
|
None
|
SRR6045706
|
Sensitive
|
lineage4.9
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
SRR6044835
|
Other
|
lineage4.9
|
None
|
SRR9971080
|
RR-TB
|
lineage2.2.1
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|