lineage | Count |
---|---|
lineage2.2.1 | 11 |
63 | |
lineage1.2.2 | 1 |
lineage3 | 2 |
lineage4.9 | 62 |
lineage2.2.1.1 | 2 |
lineage4 | 48 |
lineage4.2.1 | 1 |
lineage4.1.2.1 | 9 |
lineage1.1.3 | 1 |
lineage3.1 | 2 |
lineage1.1 | 1 |
lineage2.2 | 6 |
lineage4.3.4.2.1 | 1 |
lineage4.8.1 | 1 |
lineage4.4.2 | 1 |
La1.8.1 | 3 |
lineage4.3.2 | 1 |
lineage4.8 | 1 |
lineage2.2.1.2 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1 | 1 |
spoligotype | Count |
---|---|
None | 228 |
ID | Drug resistance | Lineage | Country iso2 | ERR2509673 | Other | lineage2.2.1 | None | ERR4818929 | HR-TB | None | ERR4820801 | Other | lineage1.2.2 | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR5341456 | Other | None | ERR2660539 | Other | lineage4.9 | None | SRR5525997 | MDR-TB | lineage2.2.1.1 | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6046015 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046046 | Other | None | SRR6046299 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046492 | Other | None | SRR6325444 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6650253 | Sensitive | lineage1.1.3 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831117 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | ERR4831638 | Sensitive | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502943 | HR-TB | None | ERR5311099 | HR-TB | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323038 | HR-TB | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323063 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR1034652 | Other | None | ERR3283017 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797046 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR400336 | Sensitive | lineage4 | None | ERR4769452 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358837 | HR-TB | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736872 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736848 | HR-TB | None | ERR8976043 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR13837630 | Sensitive | lineage4.9 | None | SRR13837631 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13837637 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861553 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR17832802 | HR-TB | lineage3 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692887 | Other | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR8692782 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | ERR176779 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR1750916 | Other | lineage2.2.1.1 | None | SRR3675265 | Other | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675270 | HR-TB | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675383 | HR-TB | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675545 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4816656 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR2446566 | Other | lineage4.1 | None |
---|