Rv3596c - c.1377A>G


Drug resistance types
83 Sensitive 13 RR-TB 76 HR-TB 36 MDR-TB 1 Pre-XDR-TB 2 XDR-TB 58 Other
lineage Counts
lineage Count
lineage4.9 124
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
lineage4.1.2.1 6
2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.9;lineage6.1.3 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
M.canetti;lineage2.1;lineage4.9 22
lineage4.4.1.1.1 1
lineage2.1;lineage4.9 5
M.canetti;lineage2.2.2;lineage6.2 2
lineage4 6
lineage2.2.1;lineage4 2
lineage2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
lineage4.1.1.3 1
La1.8.1 2
lineage2.2.1 9
M.canetti;lineage2.1;lineage4.1.2.1 1
M.canetti;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage2.1;lineage2.2;lineage6.3 1
lineage2.2.1;lineage4.9 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1 1
lineage2.2 2
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage2.2 2
lineage4.9;lineage7 2
lineage3 2
lineage4.3.4.2.1 1
lineage2.2.1.2;lineage7 1
lineage4.1.1.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La3;M.canetti;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.8.1 1
lineage4.8 1
M.canetti;lineage4.3.1;lineage4.9 1
La1.7.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage1.1 1
La3;M.canetti;lineage3.1 1
La1.7.1 1
lineage3.1.2.1;lineage4 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 1
lineage4.1;lineage4.9 1
lineage2.2.1.2 2
M.canetti;lineage2.1;lineage4 1
La1.7.X-unk4;lineage4.9 1
lineage2.1;lineage4.3.2 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.7;lineage4.9 2
lineage3.1.2.1 1
La1.7.1;La1.7.X-unk4 1
lineage4.4.2 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage1.1.1;lineage4 1
M.canetti;lineage2.1;lineage3 1
spoligotype Counts
spoligotype Count
None 269
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1162864 Other lineage4.1.2.1 None
ERR176778 HR-TB lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR349330 Sensitive lineage4.9 None
ERR363446 Sensitive lineage4.9 None
ERR926156 Sensitive lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR926165 Sensitive lineage4.9 None
SRR3675243 Other lineage4.9 None
SRR1640750 Other None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046878 Other lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1175506 Sensitive lineage4.9 None
SRR1180250 Other lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR3468607 Other lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736872 HR-TB lineage4.9 None
SRR3675270 Other lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369158 Other lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675265 Other lineage4 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675292 Sensitive lineage4.9 None
SRR1166821 Other lineage4.1.2.1 None
ERR363490 Sensitive lineage4.9 None
ERR363479 Sensitive lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
SRR13861153 Other lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR373945 Sensitive lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR6865502 Sensitive lineage4 None
ERR3797019 Other La1.8.1 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR11662694 Other lineage4.9 None
ERR363474 Sensitive lineage4.9 None
ERR4769457 Other lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR1063846 HR-TB lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6045371 Other lineage4.9 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR1180319 Sensitive lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR3675541 Sensitive lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926164 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1180399 Sensitive lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR29097054 Sensitive lineage4.9 None
ERR349266 Sensitive lineage4.9 None
ERR373946 Sensitive lineage4.9 None
SRR3675472 Sensitive lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR349296 Sensitive lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
SRR13861553 Other lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR2509673 Other lineage2.2.1 None
ERR349264 Sensitive lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180355 Sensitive lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
SRR17832802 HR-TB lineage3 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045503 Sensitive lineage4.9 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR3797023 HR-TB La1.8.1 None
ERR4819241 Other lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
SRR1180406 Sensitive lineage4.9 None
ERR369162 Other lineage4.9 None
ERR4816113 Sensitive lineage4.1.1.1 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR1180345 Other lineage4.9 None
ERR369163 Sensitive lineage4.9 None
ERR1063896 Sensitive None
ERR363498 Sensitive lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR926162 Sensitive lineage4.9 None
ERR363421 Sensitive lineage4.9 None
SRR9971150 RR-TB lineage4.8.1 None
ERR2446566 Other lineage4.9 None
ERR363437 Sensitive lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
SRR6045347 Other lineage4.9 None
SRR6046897 Sensitive lineage4.9 None
SRR29097058 Other lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
SRR3675209 Sensitive lineage4.9 None
ERR349299 Other lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR400336 Sensitive lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
ERR108471 HR-TB lineage4.9 None
SRR1181349 Sensitive lineage4 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926154 Sensitive lineage4.9 None
SRR21677886 Sensitive lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
ERR2660539 Other lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR373947 Other lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR29017081 Sensitive lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR363456 Sensitive lineage4.9 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR7240492 HR-TB La1.7.1 None
SRR1180312 Sensitive lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR28351455 Other lineage3.1.2.1;lineage4 None
ERR363500 Sensitive lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1181325 Sensitive lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR1175127 Other lineage2.2.1.2 None
SRR12142339 HR-TB lineage2.2.1 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4821053 RR-TB lineage3 None
SRR6045053 Other lineage4 None
SRR6046046 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR2693228 RR-TB lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
SRR3675269 RR-TB lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR349300 Sensitive lineage4.9 None
ERR926160 Sensitive lineage4.9 None
ERR181887 Other lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR349265 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR363426 Sensitive lineage4.9 None
SRR29096943 Sensitive lineage3.1.2.1 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR363449 Sensitive lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675260 Sensitive lineage4.9 None
DRR188519 Other lineage4.4.2 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR363499 Sensitive lineage4.9 None
ERR349298 Sensitive lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR212138 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR971389 Sensitive lineage4.9 None
ERR363502 Other lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR363447 Other lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
ERR4769452 Other lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR9971080 RR-TB lineage2.2.1 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None