Rv3596c - c.1377A>G


Drug resistance types
65 Sensitive 19 RR-TB 50 HR-TB 82 MDR-TB 3 Pre-XDR-TB 2 XDR-TB 74 Other
lineage Counts
lineage Count
lineage4.4.1.1.1 1
M.canetti;lineage2.1;lineage4.9 22
lineage4.9 115
lineage2.1;lineage4.9 5
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage2.2.1 8
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage2.2.1;lineage4 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.1.2.1 6
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
M.canetti;lineage2.1;lineage6.3 1
La1.7;lineage4.9 2
La1.7.1;La1.7.X-unk4;lineage7 1
lineage2.2.1.2 2
lineage2.2.1;lineage4.9 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
La1.7.1 1
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1;lineage3 1
lineage2.2 3
17
lineage4.3.4.2.1 2
lineage4.9;lineage2.1 1
lineage6;lineage4.3.1;lineage2 1
lineage4.3 3
lineage4.9;La1.2.BCG 1
lineage4.9;lineage4.2;lineage4.1.4;lineage2.1 2
lineage4 8
lineage6 1
M.canetti;lineage2.2 2
M.canetti;lineage2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage3.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;M.canetti;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.8.1 2
lineage3 2
lineage4.8 2
La3;M.canetti;lineage4.8;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
lineage4.1.1.3 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.9;lineage7 2
M.canetti;lineage2.1 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 1
lineage3.1.2.1;lineage4 1
lineage4.5;La1 5
lineage6.2;lineage6.1.2 1
lineage9;lineage2.1 1
lineage4.1.1.1 1
La1.7.X-unk4;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.8.1 1
lineage4.9;lineage6.1.3 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage2.2.1.2;lineage7 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage2;lineage4.9 1
La1.7.1;lineage4.9 1
lineage4.3.1;lineage4.9;lineage6 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage2.1;lineage4.3.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage1.1.1;lineage4 1
lineage4.4.2 1
La3 1
lineage2.1;lineage2.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 295
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1181215 Sensitive lineage4.4.1.1.1 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369158 Other lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR4818929 HR-TB lineage4.9 None
SRR3675292 Sensitive lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR363474 Sensitive lineage4.9 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR926154 Sensitive lineage4.9 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR13861153 Other lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR349265 Other lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR6046593 Other lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR349330 Sensitive lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
ERR176778 HR-TB lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
ERR4769457 Other lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1166821 RR-TB lineage4.1.2.1 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR363498 Other lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR6045706 Other lineage4.9 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1175513 Sensitive lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR108471 HR-TB lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR363490 Other lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926164 Other lineage4.9 None
ERR363502 Other lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1180391 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
ERR4769452 Other lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
ERR2509673 Other lineage2.2.1 None
ERR4769450 Other lineage4.9 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR4819241 Other lineage4.9 None
SRR7240492 MDR-TB La1.7.1 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR363479 Other lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR1180410 Sensitive lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR971389 Other lineage4.9 None
ERR1063896 HR-TB None
22d66166-2394-4dae-8447-b8d4b6f8ba0a HR-TB lineage4.3.4.2.1 None
728d0b23-381e-4124-8fcc-5f6adfb585f2 Sensitive lineage4.9;lineage2.1 None
218c4d09-b0d3-4bbc-b907-8858738ed95e HR-TB None
d00c459c-22ee-45a9-a860-7035d6fba317 HR-TB None
ebdfb952-9bee-4322-a7c8-89feb3f731e5 Sensitive lineage6;lineage4.3.1;lineage2 None
b22cc88d-171e-4d35-8e44-6fffc20aa85f HR-TB None
2667d3d6-b665-43d3-abf1-937e58d14181 Pre-XDR-TB lineage4.3 None
6057cdcd-4368-47ed-b882-bf8d1dbceab0 Other lineage4.9;La1.2.BCG None
e01acbf3-e7ce-4af8-9725-5fcff150c8ce Other lineage4.9;lineage4.2;lineage4.1.4;lineage2.1 None
3b39419e-d662-4922-8dfb-c4abb9c92657 HR-TB None
7ee9c984-9526-4c01-aa19-4ac33498c3df HR-TB lineage2.2 None
aa4bcf12-d64d-4acb-8f5f-e1faa38e3ba4 HR-TB lineage4 None
2e9c9cc1-c86b-497f-96c8-50ac57ae540b Sensitive lineage6 None
SRR1180406 Sensitive lineage4.9 None
ERR369162 Other lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR13861510 Other lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR6046046 Other lineage4.9 None
ERR363499 Other lineage4.9 None
SRR3675265 Other lineage4 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR6046878 Other lineage4.9 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926165 Other lineage4.9 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3797015 HR-TB lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR12142339 HR-TB lineage2.2.1 None
ERR6866125 Sensitive lineage4.1.2.1 None
SRR3675269 RR-TB lineage4.9 None
ERR369163 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR181887 Other lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
SRR17832802 HR-TB lineage3 None
SRR10315751 MDR-TB lineage4.8 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176658 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6865502 Sensitive lineage4 None
SRR1180312 Sensitive lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR926160 Other lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR4816551 MDR-TB lineage4.1.1.3 None
ERR349264 Other lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR2446566 Other lineage4.9 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR1181325 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
ERR3283040 HR-TB lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR3468607 RR-TB lineage4.9 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675243 MDR-TB lineage4.9 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
SRR1175506 Sensitive lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR6045503 Other lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675209 Sensitive lineage4.9 None
ERR363456 Sensitive lineage4.9 None
SRR1640750 RR-TB None
SRR28351455 Other lineage3.1.2.1;lineage4 None
5fac326d-6608-4ecf-acae-da4634e68ddf Sensitive None
e36cc082-9ce5-484d-b7b0-09670e6f3253 HR-TB None
50cd1905-4739-4e51-a1e1-0b509d73fffc HR-TB None
162e9a10-9a7d-430d-b797-dbd77bf684cc Other lineage4.8 None
273bd161-b14a-4bfb-9086-b4dc34a0858c Sensitive lineage4.5;La1 None
a4ef51cf-09fb-4b4e-a8cd-2f5384d8ac4a MDR-TB None
0d6a9908-4379-498a-8fe1-92a6afa56326 Sensitive lineage6.2;lineage6.1.2 None
ca61bade-cc49-4f9f-b28c-66d8a4fcb265 HR-TB None
38069749-2fc1-4eed-915a-5a5d9881a629 Sensitive lineage9;lineage2.1 None
77be862d-c50d-48c3-9c3c-ea5c987e588f HR-TB None
8a1375a0-53e6-4426-ba2f-ab710f67e63c HR-TB None
ERR349300 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4816113 Sensitive lineage4.1.1.1 None
ERR176766 MDR-TB lineage2.1;lineage4.9 None
ERR363449 Other lineage4.9 None
ERR373945 Other lineage4.9 None
SRR1175127 Other lineage2.2.1.2 None
SRR1180345 Other lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR363421 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR3675270 Other lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR349296 Sensitive lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4821053 RR-TB lineage3 None
SRR1181402 Sensitive lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
ERR926156 Other lineage4.9 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693228 RR-TB lineage4.9 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR9971150 RR-TB lineage4.8.1 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR373946 Other lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR363426 Sensitive lineage4.9 None
SRR6045347 Other lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR6046897 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4 None
ERR3797019 Other La1.8.1 None
ERR926158 Sensitive lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR400336 Sensitive lineage4.9 None
ERR349299 Other lineage4.9 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR13861553 RR-TB lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR1180250 Other lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR3468544 RR-TB lineage2.1;lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR3675541 Sensitive lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR21677886 Sensitive lineage4.9 None
SRR1162864 MDR-TB lineage4.1.2.1 None
SRR1175512 Sensitive lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797046 HR-TB lineage4.9 None
ERR363447 Other lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR373947 Other lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR363500 Other lineage4.9 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675260 Sensitive lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR473314 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR349266 Other lineage4.9 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
DRR188519 Other lineage4.4.2 None
ERR363446 Other lineage4.9 None
SRR6045053 Other lineage4 None
c3f0f8b1-b9b1-4656-8eb7-445f8944b411 Sensitive lineage4.5;La1 None
e4bc9dc6-3537-4da0-8a87-01a7ce11b362 Other lineage4.3 None
9ee578d7-f578-416a-96bf-335cd73eca7a HR-TB La3 None
11fd4211-196e-4c91-ba1b-02ffa60be53f Sensitive lineage4.5;La1 None
fd22771a-ec72-4976-8098-5b6823f90241 Sensitive None
6af4b527-4fcf-43b8-a5be-5f2b9685379a HR-TB lineage4 None
1f6da41a-f0e3-4af0-9a03-e6246e07642e Sensitive lineage4.5;La1 None
57aca7f7-ae2e-49e4-852d-9f0933fe69ec Sensitive None
1127ca6f-f157-405e-9fef-048b8812a8bf Other lineage4.9;lineage4.2;lineage4.1.4;lineage2.1 None
17b5135f-7c08-40ed-aae7-413c478a36eb Other None
3542d89d-7453-461c-ab2d-38af02cfb00b Sensitive lineage4.5;La1 None
8ee962f9-7051-4a2f-9330-631a4d144fca Other None
70d6f54e-6947-4f68-b88f-03bf438773be Pre-XDR-TB lineage4.3 None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None