Rv0667 - c.2076C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
7 RR-TB
33 HR-TB
11 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
13 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 13 |
| lineage4.3.4.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 8 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage1.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.5 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| 1 | |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| La1.7;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 1 |
| M.canetti;lineage2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1 | 1 |
| lineage4.3.4 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.3.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 69 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675494 | RR-TB | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR3077978 | Other | lineage1.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR7240492 | HR-TB | La1.7.1 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1640750 | Other | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1166821 | Other | lineage4.1.2.1 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR161037 | Other | lineage4.9 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None |
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