Rv0407 - c.412_414delCTAinsTTG
Drug resistance types
5 Sensitive
5 RR-TB
58 HR-TB
14 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
66 Other
lineage Counts
| lineage | Count |
|---|---|
| 78 | |
| lineage2 | 2 |
| lineage2.2.1 | 7 |
| lineage3 | 2 |
| lineage4.6.1.1 | 1 |
| La1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2.1 | 7 |
| lineage1.1.2 | 1 |
| lineage4.8 | 3 |
| lineage4.6.2.2 | 1 |
| lineage4.1.3 | 2 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.3 | 3 |
| lineage4.4.1.1 | 2 |
| lineage4 | 4 |
| lineage4.9 | 21 |
| lineage3.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage2.1 | 2 |
| lineage4.5 | 1 |
| lineage2.2 | 2 |
| lineage4.1.1 | 1 |
| lineage4.1;lineage1 | 1 |
| lineage4.8;La3 | 1 |
| La1.8.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 153 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4799025 | Pre-XDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811142 | MDR-TB | None | ERR6198317 | Other | La1.2 | None | ERR702406 | HR-TB | None | ERR6358979 | Other | None | ERR702404 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786671 | Other | None | ERR9786604 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1172817 | HR-TB | None | ERR9787197 | Other | None | SRR1169194 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10808805 | Sensitive | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1172858 | MDR-TB | lineage4.3.3 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1175049 | RR-TB | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13861305 | Other | lineage4.9 | None | SRR13837677 | Sensitive | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | SRR13861534 | Other | lineage4.9 | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | ERR11081257 | Other | lineage4.8 | None | SRR25827682 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675236 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816999 | Other | None | ERR4817037 | Other | lineage4.9 | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3742665 | HR-TB | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | SRR5341302 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818929 | HR-TB | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514692 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818615 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6485010 | MDR-TB | lineage2.2.1 | None | SRR6045327 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6789626 | Other | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR7535086 | Other | None | ERR323043 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR3283027 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797071 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR5336148 | Other | None | ERR4407463 | HR-TB | None |
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