lineage | Count |
---|---|
lineage4.9 | 21 |
lineage4.1.1 | 2 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
147 | |
lineage3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage4 | 12 |
lineage2.2.1 | 9 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2 | 5 |
lineage4;lineage1.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.2.2.2 | 1 |
lineage3 | 2 |
lineage4.1.2.1 | 7 |
lineage1.1 | 1 |
lineage5.2 | 2 |
La2 | 1 |
lineage3.1 | 3 |
La1 | 1 |
La1.8.1 | 1 |
lineage2 | 3 |
lineage3.1.2 | 1 |
lineage4.3.2 | 1 |
lineage1.1.2 | 1 |
lineage4.3.3 | 1 |
lineage4.5 | 2 |
lineage4.3.4.1 | 1 |
spoligotype | Count |
---|---|
None | 234 |
ID | Drug resistance | Lineage | Country iso2 | SRR26159043 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR176651 | HR-TB | None | ERR212123 | Other | None | SRR3675383 | HR-TB | None | SRR3675510 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818394 | Other | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR5341418 | Other | None | ERR4818615 | Other | None | ERR4818929 | HR-TB | None | SRR5341330 | HR-TB | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR5341456 | Other | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693227 | Other | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6046299 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046046 | Other | None | SRR6046066 | HR-TB | None | SRR6046362 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046397 | Other | None | SRR6046644 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831117 | HR-TB | None | ERR323036 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502532 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502889 | Other | None | ERR323055 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7535086 | Other | None | ERR323041 | HR-TB | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1063883 | Sensitive | lineage4 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283017 | HR-TB | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR4188247 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR6359045 | HR-TB | None | ERR5336148 | Other | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR702406 | HR-TB | None | ERR702404 | HR-TB | None | ERR736848 | HR-TB | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR736865 | HR-TB | None | ERR736874 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR9119669 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR987722 | HR-TB | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1174897 | HR-TB | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1196494 | MDR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR12416824 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861241 | HR-TB | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR15368973 | Other | None | SRR13861510 | Other | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None |
---|