Rv1854c - c.738T>C
Drug resistance types
5 Sensitive
2 RR-TB
94 HR-TB
9 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| 96 | |
| lineage4.1.2.1 | 4 |
| lineage4 | 9 |
| lineage4.3.2.1 | 2 |
| lineage3.1 | 4 |
| La2 | 1 |
| lineage4.9 | 6 |
| La1 | 1 |
| lineage4.3.2 | 1 |
| lineage2.2.2 | 1 |
| lineage2 | 3 |
| lineage4.3.3 | 2 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1 | 4 |
| lineage1.1.1 | 1 |
| lineage2.2 | 2 |
| lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.8 | 1 |
| lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 142 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045952 | HR-TB | None | SRR6045399 | Other | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | ERR4830353 | Other | None | SRR6046514 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | ERR294248 | HR-TB | None | ERR4831117 | HR-TB | None | ERR323036 | HR-TB | None | SRR6982258 | Sensitive | lineage4.3.2.1 | None | ERR294266 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | ERR323043 | HR-TB | None | SRR7535086 | Other | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR3797043 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR4407463 | HR-TB | None | ERR387051 | HR-TB | None | ERR6358991 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4811142 | MDR-TB | None | ERR6358837 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR736867 | HR-TB | None | ERR702404 | HR-TB | None | ERR736835 | HR-TB | None | ERR702406 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR736874 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR987722 | HR-TB | None | SRR069989 | HR-TB | lineage2 | None | SRR1172728 | MDR-TB | None | SRR1169194 | Other | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1173788 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173778 | Other | None | SRR1173400 | Other | None | SRR1175049 | RR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1175074 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12199422 | Other | lineage2.2.1 | None | SRR1196768 | MDR-TB | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR12416824 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR3675488 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR25827682 | Other | None | ERR176793 | Other | lineage4.1.1 | None | ERR161033 | HR-TB | None | SRR2101568 | Sensitive | lineage4.3.2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675222 | Other | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675501 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675383 | HR-TB | None | SRR3675456 | HR-TB | None | ERR2229054 | Sensitive | lineage4.8 | None | SRR3675545 | HR-TB | None | SRR3675574 | HR-TB | None | ERR212123 | Other | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | ERR4816466 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | SRR5341313 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR5341302 | HR-TB | None | ERR234659 | HR-TB | None | SRR5341432 | HR-TB | lineage4 | None | SRR6044790 | HR-TB | None | SRR5341315 | Sensitive | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6045450 | Other | lineage4.9 | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6044838 | Other | lineage4.9 | None |
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