Rv1644 - c.-231G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
31 Sensitive
0 RR-TB
28 HR-TB
7 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 48 |
| lineage4.9;lineage6.3 | 1 |
| 3 | |
| La3;lineage4.9 | 11 |
| lineage2.2.1 | 3 |
| lineage4.9;lineage7 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage5.2 | 2 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage5.1.4 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 2 |
| lineage4.5 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage1.1.3.2 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4 | 1 |
| La1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| La3;lineage4 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 99 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29097054 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR12708416 | Sensitive | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2514692 | Other | None | ERR2514821 | Sensitive | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR29096107 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR736831 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR29096717 | Sensitive | lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR3797029 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283028 | Other | La3;lineage4 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR29096276 | Sensitive | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR3797046 | HR-TB | lineage4.9 | None |
|---|
