lineage | Count |
---|---|
103 | |
lineage4.9 | 12 |
lineage4 | 31 |
lineage2.2 | 4 |
lineage2.2.1.1 | 1 |
lineage2.2.1 | 3 |
lineage4.6.2.2 | 2 |
lineage4.4.1.2 | 1 |
La2 | 1 |
lineage2 | 3 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
La1 | 1 |
lineage3 | 1 |
lineage3.1.2 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage4.1.2.1 | 3 |
lineage1.1.2 | 1 |
lineage6.3.1 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.3 | 1 |
lineage3.1 | 1 |
lineage4.5 | 1 |
lineage1.1.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.3 | 1 |
spoligotype | Count |
---|---|
None | 180 |
ID | Drug resistance | Lineage | Country iso2 | ERR1035138 | MDR-TB | None | ERR4818394 | Other | lineage4.9 | None | ERR4818929 | HR-TB | None | ERR4818615 | Other | None | ERR2693257 | Other | None | SRR5341470 | HR-TB | None | SRR6045503 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | ERR2693231 | Other | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6046305 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6045526 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | ERR4830353 | Other | None | SRR6046397 | Other | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6046540 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6789626 | Other | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR323053 | HR-TB | None | ERR502532 | HR-TB | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR3283027 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363447 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797014 | Other | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797061 | Other | None | ERR3797044 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4798262 | HR-TB | La1 | None | ERR736835 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6358991 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736865 | HR-TB | None | ERR736839 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736874 | HR-TB | None | ERR9786843 | Other | None | ERR9117709 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1167384 | Other | lineage4 | None | ERR9787197 | Other | None | ERR987722 | HR-TB | None | SRR1172234 | Other | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR19303884 | HR-TB | None | SRR12142341 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR3675221 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR176751 | HR-TB | None | ERR4815604 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR19304036 | HR-TB | None | SRR2101360 | MDR-TB | lineage4.1.2.1 | None | SRR3675465 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675236 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675510 | Other | None | SRR3675234 | Other | None | ERR212034 | HR-TB | None | ERR212033 | HR-TB | None | ERR212121 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | ERR234659 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None |
---|