Rv0006 - c.1629C>T

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
279 Sensitive 3 RR-TB 32 HR-TB 5 MDR-TB 2 Pre-XDR-TB 1 XDR-TB 53 Other
lineage Counts
lineage Count
lineage3.1;lineage9 1
lineage4.9 52
M.canetti;lineage4.2;lineage4.9 1
La3 255
La1.8.1 1
La3;lineage2.2.1 3
lineage2.2.1 10
lineage2.1;lineage4.9 1
lineage4.3.4.2.1 2
lineage2.2.1.2 5
La3;lineage4.9 8
lineage4.3.2 1
lineage4.5 1
lineage4 1
La1.7;lineage4.9;lineage7 3
lineage2.2.1.1 3
La1.7;lineage4.9 4
1
La1;lineage4.9 1
La3;lineage4 3
lineage4.4.2 1
lineage4.4.1.2 1
La1.7;lineage3.1;lineage4 1
lineage4.4.1.1 2
M.canetti;lineage4.9 4
lineage4.9;lineage7 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.2;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage1;lineage4.9 1
La1.7;M.canetti;lineage4.9 2
lineage3 1
spoligotype Counts
spoligotype Count
None 375
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR3797029 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR7069989 Other La3 None
SRR7070129 Sensitive La3 None
SRR26112207 Other La3 None
SRR28409674 Sensitive La3 None
ERR2512942 Sensitive La3 None
ERR4814716 Sensitive La3 None
SRR28859928 Sensitive La3 None
ERR9125596 Sensitive La3 None
ERR2659153 Sensitive La3 None
ERR4829235 Other La3 None
SRR28868577 Other La3 None
SRR29053316 Sensitive La3 None
SRR27450188 Sensitive La3 None
SRR29053533 Sensitive La3 None
ERR4818708 Sensitive La3 None
ERR4819952 Sensitive La3 None
ERR4820063 Sensitive La3 None
ERR4820192 Sensitive La3 None
ERR4822262 Sensitive La1.8.1 None
ERR6375119 Sensitive La3 None
ERR6375121 Sensitive La3 None
ERR6375122 Sensitive La3 None
ERR6375123 Sensitive La3 None
ERR6375126 Sensitive La3 None
ERR6375124 Sensitive La3 None
SRR10251187 Sensitive La3 None
ERR6375125 Sensitive La3 None
ERR6375127 Sensitive La3 None
ERR6375140 Sensitive La3 None
SRR10251190 Sensitive La3 None
ERR6375141 Sensitive La3 None
ERR6375142 Sensitive La3 None
SRR10251191 Sensitive La3 None
SRR10251192 Sensitive La3 None
SRR10251200 Sensitive La3 None
SRR10251202 Sensitive La3 None
SRR10321128 Sensitive La3 None
SRR10251199 Sensitive La3 None
SRR10321130 Sensitive La3 None
SRR10321134 Sensitive La3 None
SRR10321149 Sensitive La3 None
SRR5642711 Sensitive La3 None
SRR5642714 Sensitive La3 None
SRR5642712 Sensitive La3 None
SRR5642716 Sensitive La3 None
SRR5642715 Other La3 None
SRR5642713 Sensitive La3 None
SRR5642718 Sensitive La3 None
SRR5642717 Sensitive La3 None
SRR6045604 Sensitive La3 None
SRR6046284 Sensitive La3;lineage2.2.1 None
ERR4799547 HR-TB lineage2.2.1 None
SRR7069844 Sensitive La3 None
ERR216965 Sensitive lineage4.9 None
ERR13290070 Sensitive La3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR161034 Other lineage4.3.4.2.1 None
ERR926160 Sensitive lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR13289522 Sensitive La3 None
SRR25515590 Sensitive lineage2.2.1.2 None
SRR11662694 Other lineage4.9 None
ERR3797063 Sensitive La3;lineage4.9 None
SRR29126907 Sensitive lineage4.3.2 None
ERR4769474 HR-TB lineage4.9 None
ERR752229 Other lineage4.5 None
SRR7496471 Sensitive lineage4 None
ERR926161 Sensitive lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
SRR29097066 Sensitive lineage4.9 None
SRR6046594 Sensitive lineage4.9 None
ERR926164 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR4796515 Sensitive La3 in
ERR4798322 Sensitive La3 in
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6046334 Sensitive La3 None
SRR1180147 Other lineage2.2.1.1 None
ERR4799643 Sensitive La3 in
ERR3283057 Sensitive La3;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR13291173 Sensitive La3 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR212001 HR-TB None
SRR25515345 Sensitive lineage2.2.1.2 None
ERR4769497 Other La1;lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR926156 Sensitive lineage4.9 None
SRR10321138 Other La3 None
SRR2100577 Sensitive La3 None
SRR2101291 Sensitive La3 None
SRR3675498 Sensitive La3 gb
ERR2517102 Sensitive La3 gb
ERR4816917 Sensitive La3 gb
ERR4817778 Sensitive La3 gb
ERR4818160 Sensitive La3 gb
ERR2512533 Sensitive La3 gb
ERR2512389 Sensitive La3 gb
ERR4820932 Sensitive La3 gb
ERR4821317 Sensitive La3 gb
ERR926165 Sensitive lineage4.9 None
ERR926155 Sensitive lineage4.9 None
SRR7069409 Sensitive La3 None
ERR13289541 Sensitive La3 None
SRR28858676 Sensitive La3 None
SRR16089393 Sensitive La3 None
ERR11067940 Sensitive La3 None
ERR11050836 Sensitive La3 None
SRR28351414 Sensitive La3 None
SRR29056019 Other La3 None
SRR7070072 Sensitive La3 None
ERR4817328 Sensitive La3 None
SRR27450479 Sensitive La3 None
SRR27450477 Sensitive La3 None
ERR13291178 Sensitive La3 None
ERR228223 Sensitive La3 None
ERR4821658 Other La3 None
SRR27450484 Sensitive La3 None
SRR5535933 Other lineage4.9 None
ERR13290040 Sensitive La3 None
SRR6046210 Other lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR015582 Sensitive La3 None
ERR234682 Sensitive La3;lineage4 None
ERR2515051 Sensitive La3 None
ERR2659155 Sensitive La3 None
ERR2659154 Sensitive La3 None
SRR7070526 Sensitive La3 None
ERR3797048 Other La3;lineage4.9 None
ERR4815024 Sensitive La3 None
ERR4818222 Sensitive La3 None
ERR4821002 Sensitive La3 None
ERR4820543 Sensitive La3 None
ERR6375116 HR-TB La3 None
ERR6375115 HR-TB La3 None
ERR6375117 Sensitive La3 None
SRR10251185 Sensitive La3 None
ERR6375118 Sensitive La3 None
ERR6375120 Sensitive La3 None
ERR6375129 Sensitive La3 None
ERR6375128 Sensitive La3 None
SRR10251188 Sensitive La3 None
ERR6375130 Sensitive La3 None
ERR6375131 Sensitive La3 None
ERR6375132 Sensitive La3 None
ERR6375133 Sensitive La3 None
SRR10251189 Sensitive La3 None
ERR6375134 Sensitive La3 None
ERR6375135 Sensitive La3 None
ERR6375137 Sensitive La3 None
SRR10251186 Sensitive La3 None
ERR6375136 Sensitive La3 None
ERR6375138 Sensitive La3 None
ERR6375139 Sensitive La3 None
SRR10251193 Sensitive La3 None
SRR10251195 Sensitive La3 None
SRR10251194 Sensitive La3 None
SRR10251198 Sensitive La3 None
SRR10251197 Sensitive La3 None
SRR10321141 Sensitive La3 None
SRR10321143 Other La3 None
SRR7069127 Other La3 None
SRR28170794 Other La3 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR13289975 Sensitive La3 None
ERR736848 Other lineage4.9 None
ERR369161 Sensitive lineage4.9 None
SRR5341293 Sensitive lineage4.9 None
ERR3275607 Sensitive La3 nl
ERR736856 Sensitive lineage4.9 None
DRR188519 Other lineage4.4.2 None
ERR3283014 Sensitive La3;lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR24061596 HR-TB lineage4.4.1.1 None
SRR6045219 HR-TB lineage4.9 None
SRR29096174 Sensitive La1.7;lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR019856 Other La3 None
SRR20970016 Other lineage2.2.1 None
ERR926154 Sensitive lineage4.9 None
ERR971389 Sensitive lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
ERR13291177 Sensitive La3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
ERR4800046 Sensitive La3 in
ERR11465511 Other lineage4.3.4.2.1 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR4799735 Sensitive La3 in
ERR4800242 Sensitive La3 in
ERR4811493 HR-TB lineage4.9 None
ERR11252664 Other lineage2.2.1 None
SRR20632814 Sensitive lineage4.9 None
SRR10251196 Sensitive La3 None
SRR6045555 Other lineage4.9 None
ERR2513671 Sensitive La3 gb
ERR2514172 Sensitive La3 gb
SRR6045015 Sensitive La3 gb
SRR6044858 Sensitive La3 gb
SRR6046695 Sensitive La3 gb
SRR6045425 Sensitive La3 gb
SRR6046736 Sensitive La3;lineage2.2.1 gb
SRR6045962 Sensitive La3 gb
SRR6044939 Sensitive La3 gb
SRR6045301 Sensitive La3 gb
SRR6046725 Sensitive La3 gb
ERR2199741 Sensitive La3 de
ERR2199829 Sensitive La3 de
ERR2200114 Sensitive La3 de
SRR3675510 Sensitive La3;lineage4.9 None
SRR25514999 Sensitive lineage2.2.1.2 None
SRR6046141 Other lineage4.9 None
ERR2514738 Sensitive La3 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR926157 Sensitive lineage4.9 None
ERR2517593 Sensitive La3 nl
ERR017782 Other La3 None
SRR1175052 HR-TB lineage4.9 None
SRR5341373 Other lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4796505 Sensitive La3 in
ERR473323 HR-TB lineage4.9 None
SRR29052939 Sensitive La3 None
ERR4820516 Sensitive La3 None
ERR13291776 Sensitive La3 None
SRR29053222 Sensitive La3 None
SRR6046131 Sensitive La3 None
ERR13290071 Sensitive La3 None
SRR27450611 Sensitive La3 None
ERR11067178 Sensitive La3 None
ERR13289791 Sensitive La3 None
ERR13290205 Sensitive La3 None
ERR11049303 Sensitive La3 None
ERR11049551 Sensitive La3 None
SRR29052772 Sensitive La3 None
ERR294241 Sensitive La3 None
SRR16089410 Sensitive La3 None
ERR13290109 Sensitive La3 None
ERR11050692 Sensitive La3 None
SRR16058605 Sensitive La3 None
SRR22048363 Sensitive La3 None
ERR11049411 Sensitive La3 None
ERR9125087 Sensitive La3 None
SRR27450483 Sensitive La3 None
SRR29053502 Sensitive La3 None
SRR16089392 Sensitive La3 None
SRR28858716 Sensitive La3 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR28351652 Sensitive La3 None
SRR27450022 Sensitive La3 None
SRR27450025 Sensitive La3 None
ERR11049107 Other La3 None
SRR29053325 Sensitive La3 None
SRR29053271 Sensitive La3 None
ERR9125828 Sensitive La3 None
ERR13291196 Sensitive La3 None
ERR13267604 Sensitive La3 None
ERR11043390 Sensitive La3 None
ERR13262070 Sensitive La3 None
SRR16058583 Sensitive La3 None
ERR13289674 Sensitive La3 None
ERR9125148 Sensitive La3 None
SRR16089402 Sensitive La3 None
SRR16057982 Sensitive La3 None
ERR4818572 Sensitive La3 None
ERR4819164 Sensitive La3 None
ERR4814915 Sensitive La3 None
ERR11050970 Sensitive La3 None
ERR11081198 Other La3 None
SRR27450478 Sensitive La3 None
SRR16058093 Sensitive La3 None
ERR234676 Sensitive La3 None
SRR16058599 Sensitive La3 None
ERR234675 Sensitive La3 None
ERR9125109 Sensitive La3 None
SRR7131127 Other La3 None
ERR9125525 Sensitive La3 None
ERR4822142 Sensitive La3 None
ERR11049614 Sensitive La3;lineage4 None
ERR4820312 Sensitive La3 None
ERR4821950 Sensitive La3 None
SRR6797355 Sensitive La3 None
SRR27450480 Sensitive La3 None
SRR27450393 Sensitive La3 None
ERR11067403 Sensitive La3 None
SRR29053033 Sensitive La3 None
SRR16058369 Sensitive La3 None
ERR11067404 Sensitive La3 None
ERR9125663 Sensitive La3 None
SRR16057940 Sensitive La3 None
ERR11068278 Sensitive La3 None
SRR6045191 Sensitive lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR2514178 Sensitive La3 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR2512788 Sensitive La3 None
ERR2512826 Sensitive La3 None
ERR2659156 Sensitive La3 None
ERR2199740 Sensitive La3 None
SRR7069873 Sensitive La3 None
ERR351884 Sensitive La3 None
SRR26112574 Other La3 None
SRR29231281 Sensitive La3 None
ERR13264906 HR-TB lineage4.4.1.1 None
ERR2446279 Sensitive La3 nl
ERR3276253 Sensitive La3 nl
SRR1735564 Sensitive La3 None
SRR26112175 Other La3 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR3675461 RR-TB lineage4.9 None
SRR28170839 Sensitive La3 None
SRR29050770 Sensitive lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
ERR13289968 Sensitive La3;lineage2.2.1 None
ERR6359074 HR-TB lineage4.9 None
SRR10315551 Sensitive lineage2.2.1 None
SRR27450476 Sensitive La3 None
SRR27450482 Sensitive La3 None
ERR13289696 Sensitive La3 None
ERR926163 Other lineage4.9 None
SRR30182773 Sensitive La3 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
ERR926159 Sensitive lineage4.9 None
ERR386816 Sensitive La3 None
SRR1172885 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
SRR29096387 Sensitive M.canetti;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2 None
SRR20969708 HR-TB lineage2.2.1 None
SRR20969731 Other lineage2.2.1 None
SRR7070025 Other La3 None
SRR3675441 Other lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR6964572 MDR-TB lineage3 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR29097054 Sensitive lineage4.9 None
ERR4797736 Sensitive La3 in
ERR4799118 Sensitive La3 in
SRR7069245 Sensitive La3 None
SRR7070522 Sensitive La3 None
SRR1183144 Other lineage2.2.1 None
SRR29017081 Sensitive lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4799479 Sensitive La3 in
SRR6046235 Sensitive La3 gb
ERR330723 Other La3 None
ERR473334 HR-TB lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR2101161 Sensitive La3 None
SRR2101222 Sensitive La3 None
ERR4815064 Sensitive La3 gb
ERR4815417 Other La3 gb
ERR4817463 Sensitive La3 gb
ERR4821662 Sensitive La3 gb
ERR4821802 Sensitive La3 gb
ERR2513195 Sensitive La3 gb
ERR2513625 Sensitive La3 gb
ERR2514578 Sensitive La3 gb
ERR2514957 Sensitive La3 gb