Rv0006 - c.1629C>T

Drug resistance types
23 Sensitive 9 RR-TB 33 HR-TB 6 MDR-TB 2 Pre-XDR-TB 1 XDR-TB 257 Other
lineage Counts
lineage Count
lineage2.2.1.2 4
La3 220
lineage2.2.1 8
lineage4.9 48
La1.7;M.canetti;lineage4.9 2
M.canetti;lineage4.9 3
lineage1;lineage4.9 1
La3;lineage4.9 8
lineage4 1
M.canetti;lineage4.2;lineage4.9 1
lineage3 2
lineage4.9.1 1
lineage4.2;lineage4.9 1
lineage2.2 2
lineage3.1;lineage9 1
lineage4.5 1
lineage4.4.1.1 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La1.7;lineage4.9;lineage7 3
La1.7;lineage3.1;lineage4 1
lineage4.9;lineage7 1
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.9 3
1
La1;lineage4.9 1
lineage4.3.4.2.1 2
La3;lineage4.1.2 1
lineage2.2.1.2;lineage7 1
La3;lineage2.2.1 1
La1.8.1;La3 1
lineage2.2.1.1 3
lineage2.1;lineage4.9 1
lineage4.4.1.2 1
La3;lineage4 1
lineage4.4.2 1
spoligotype Counts
spoligotype Count
None 331
Geographic prevalence
Country level data for this variant is available for 47 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR25515590 Sensitive lineage2.2.1.2 None
ERR11067940 Other La3 None
ERR11050836 Other La3 None
ERR2514738 Other La3 None
ERR351884 Other La3 None
SRR20969731 Other lineage2.2.1 None
SRR12142339 HR-TB lineage2.2.1 None
ERR2513195 Other La3 gb
ERR926154 Sensitive lineage4.9 None
ERR926157 Other lineage4.9 None
SRR27450393 Other La3 None
SRR6045555 Other lineage4.9 None
ERR4822142 Other La3 None
SRR10321134 Other La3 None
SRR16058093 Other La3 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR16089402 Other La3 None
SRR27450611 Other La3 None
SRR6046133 HR-TB lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR10251189 Other La3 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR11049303 Other La3 None
ERR3797063 Other La3;lineage4.9 None
ERR6375118 Other La3 None
SRR7496471 Sensitive lineage4 None
ERR3283011 Other La3;lineage4.9 None
ERR2446279 Other La3 nl
ERR6375128 Other La3 None
ERR6375120 Other La3 None
ERR6375124 Other La3 None
ERR019856 Other La3 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
SRR6045301 Other La3 gb
ERR926163 Other lineage4.9 None
SRR6964572 MDR-TB lineage3 None
ERR6375126 Other La3 None
ERR4798322 Other La3 in
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4817328 Other La3 None
ERR4769474 HR-TB lineage4.9 None
ERR6375141 Other La3 None
ERR11081198 Other La3 None
SRR10251202 Other La3 None
ERR6375142 Other La3 None
ERR2512942 Other La3 None
ERR9125596 Other La3 None
ERR4799479 Other La3 in
ERR2659155 Other La3 None
ERR11049107 Other La3 None
SRR10251190 Other La3 None
SRR5341293 Sensitive lineage4.9 None
ERR4818160 Other La3 gb
ERR11466062 Sensitive lineage4.9.1 None
ERR2517593 Other La3 nl
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR234682 Other La3 None
SRR2101291 Other La3 None
SRR5642712 Other La3 None
ERR6375115 HR-TB La3 None
ERR9125525 Other La3 None
ERR4829235 Other La3 None
SRR6045191 Sensitive lineage4.9 None
ERR11067403 Other La3 None
ERR2513625 Other La3 gb
ERR473323 HR-TB lineage4.9 None
SRR27450484 Other La3 None
ERR4817427 Other La3 None
SRR6046594 Other lineage4.9 None
ERR926155 Other lineage4.9 None
SRR28170839 Other La3 None
ERR11067178 Other La3 None
ERR6375121 Other La3 None
ERR330723 Other La3 None
SRR2100577 Other La3 None
SRR20970016 Other lineage2.2 None
ERR11050970 Other La3 None
ERR4799118 Other La3 in
ERR4818708 Other La3 None
SRR28351414 Other La3 None
ERR2512533 Other La3 gb
SRR6046235 Other La3 gb
ERR4817463 Other La3 gb
ERR4800242 Other La3 in
ERR4821317 Other La3 gb
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR27450482 Other La3 None
ERR4815024 Other La3 None
ERR752229 Other lineage4.5 None
SRR3675510 Sensitive La3;lineage4.9 None
ERR017782 Other La3 None
SRR3675441 RR-TB lineage4.9 None
SRR10321143 Other La3 None
ERR2512826 Other La3 None
SRR7069989 Other La3 None
SRR5642715 Other La3 None
SRR7069245 Other La3 None
SRR24061596 HR-TB lineage4.4.1.1 None
SRR6045604 Sensitive La3 None
ERR6375119 Other La3 None
SRR16057940 Other La3 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR2659153 Other La3 None
ERR228223 Other La3 None
SRR10321149 Other La3 None
SRR10251187 Other La3 None
SRR7069844 Other La3 None
ERR386816 Other La3 None
ERR4799735 Other La3 in
SRR16058583 Other La3 None
ERR6375117 Other La3 None
ERR4796515 Other La3 in
ERR6375127 Other La3 None
SRR10321138 Other La3 None
SRR6046141 Other lineage4.9 None
ERR4815417 Other La3 gb
ERR926156 Other lineage4.9 None
SRR7069127 Other La3 None
ERR4818572 Other La3 None
ERR926162 Sensitive lineage4.9 None
ERR4820063 Other La3 None
SRR27450025 Other La3 None
ERR6375133 Other La3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR4814716 Other La3 None
ERR4769439 HR-TB lineage4.9 None
SRR10321130 Other La3 None
ERR015582 Other La3 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR4818222 Other La3 None
SRR6045219 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
ERR926160 Other lineage4.9 None
SRR7070526 Other La3 None
ERR2199829 Other La3 de
SRR6046695 Other La3 gb
SRR5642718 Other La3 None
SRR6045425 Other La3 gb
ERR9125148 Other La3 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR11067404 Other La3 None
ERR11043390 Other La3 None
ERR4820192 Other La3 None
SRR10251195 Other La3 None
ERR926159 Sensitive lineage4.9 None
SRR10251185 Other La3 None
ERR2514578 Other La3 gb
SRR6046725 Other La3 gb
ERR4820543 Other La3 None
SRR10251191 Other La3 None
SRR5642717 Other La3 None
ERR3283014 Other La3;lineage4.9 None
ERR4797736 Other La3 in
ERR6375122 Other La3 None
ERR2517102 Other La3 gb
ERR2659154 Other La3 None
ERR926164 Other lineage4.9 None
SRR10251192 Other La3 None
SRR16089410 Other La3 None
SRR10251188 Other La3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
SRR6046334 Other La3 None
ERR2659156 Other La3 None
ERR4820312 Other La3 None
SRR10251198 Other La3 None
SRR6046284 Other lineage2.2.1 None
ERR4796505 Other La3 in
SRR16057982 Other La3 None
ERR4820516 Other La3 None
SRR7070522 Other La3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR6375139 Other La3 None
SRR27450188 Other La3 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR1180172 RR-TB lineage2.2.1 None
ERR4819164 Other La3 None
SRR1183144 RR-TB lineage2.2.1 None
ERR4800046 Other La3 in
SRR2101222 Other La3 None
ERR1034634 HR-TB lineage4.9 None
SRR27450480 Other La3 None
ERR4821950 Other La3 None
ERR473334 HR-TB lineage4.9 None
ERR294241 Other La3 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR212001 HR-TB None
SRR25515345 Sensitive lineage2.2.1.2 None
ERR2514957 Other La3 gb
ERR4821662 Other La3 gb
ERR3276253 Other La3 nl
SRR25514999 Sensitive lineage2.2.1.2 None
ERR4769497 Other La1;lineage4.9 None
SRR5341373 Other lineage4.9 None
SRR27450022 Other La3 None
SRR10251200 Other La3 None
SRR10251193 Other La3 None
SRR28170794 Other La3 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR2200114 Other La3 de
ERR2512389 Other La3 gb
ERR6375136 Other La3 None
ERR6375137 Other La3 None
ERR11050692 Other La3 None
SRR5535933 Other lineage4.9 None
ERR4817778 Other La3 gb
ERR2515051 Other La3 None
ERR3283055 HR-TB lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR20969708 HR-TB lineage2.2 None
ERR926165 Other lineage4.9 None
ERR4819952 Other La3 None
ERR4814915 Other La3 None
SRR16089392 Other La3 None
SRR10321141 Other La3 None
ERR6375134 Other La3 None
ERR736848 Other lineage4.9 None
SRR5642713 Other La3 None
SRR26112574 Other La3 None
ERR6375131 Other La3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
ERR4799547 HR-TB lineage2.2.1 None
ERR11049614 Other La3;lineage4.1.2 None
SRR16089393 Other La3 None
SRR1735564 Other La3 None
SRR27450477 Other La3 None
ERR216965 Sensitive lineage4.9 None
SRR10321128 Other La3 None
ERR369161 Sensitive lineage4.9 None
SRR7131127 Other La3 None
SRR7069409 Other La3 None
SRR5642716 Other La3 None
ERR3275709 HR-TB lineage3 nl
SRR26112175 Other La3 None
SRR6046131 Other La3 None
ERR4821002 Other La3 None
ERR11049411 Other La3 None
SRR3675461 RR-TB lineage4.9 None
ERR234675 Other La3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
SRR5642714 Other La3 None
ERR6375123 Other La3 None
SRR16058605 Other La3 None
ERR9125109 Other La3 None
SRR27450483 Other La3 None
ERR2446566 Other lineage4.9 None
SRR6046210 Other lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR11049551 Other La3 None
SRR10251199 Other La3 None
ERR6375140 Other La3 None
SRR3675498 Other La3 gb
ERR4821658 Other La3 None
SRR7070129 Other La3 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR6044939 Other La3 gb
SRR1172885 HR-TB lineage4.9 None
ERR234676 Other La3 None
ERR4596910 Sensitive lineage4.9 None
ERR9125663 Other La3 None
ERR3797064 Other La3;lineage4.9 None
SRR7070025 Other La3 None
SRR6044876 Sensitive lineage4.9 None
SRR6046736 Other La3;lineage2.2.1 gb
ERR4822262 Other La1.8.1;La3 None
SRR1180147 RR-TB lineage2.2.1.1 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR7070072 Other La3 None
SRR10251194 Other La3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR16058369 Other La3 None
ERR11465511 Other lineage4.3.4.2.1 None
ERR2512788 Other La3 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR6375138 Other La3 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR3275607 Other La3 nl
ERR4811493 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
SRR6045962 Other La3 gb
SRR27450476 Other La3 None
ERR6375130 Other La3 None
ERR3283028 Other La3;lineage4 None
DRR188519 Other lineage4.4.2 None
SRR28351652 Other La3 None
ERR11252664 Other lineage2.2.1 None
SRR28409674 Other La3 None
ERR4820932 Other La3 gb
ERR2513671 Other La3 gb
ERR2199741 Other La3 de
ERR2514172 Other La3 gb
SRR6045015 Other La3 gb
ERR4799643 Other La3 in
ERR4821802 Other La3 gb
ERR4815064 Other La3 gb
SRR16058599 Other La3 None
ERR4816917 Other La3 gb
ERR3797029 Other lineage4.9 None
SRR5642711 Other La3 None
ERR6359074 HR-TB lineage4.9 None
SRR10251197 Other La3 None
ERR6375125 Other La3 None
ERR9125087 Other La3 None
SRR7069873 Other La3 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
SRR27450479 Other La3 None
ERR2514178 Other La3 None
SRR20632814 Sensitive lineage4.9 None
ERR11068278 Other La3 None
ERR6375129 Other La3 None
SRR26112207 Other La3 None
ERR9125828 Other La3 None
SRR22048363 Other La3 None
SRR2101161 Other La3 None
ERR6375116 HR-TB La3 None
ERR6375135 Other La3 None
ERR2199740 Sensitive La3 None
SRR10251186 Other La3 None
ERR3797048 Other La3;lineage4.9 None
SRR10251196 Other La3 None
SRR27450478 Other La3 None