Run ID: ERR4820543
Sample name:
Date: 01-04-2023 16:44:37
Number of reads: 2562213
Percentage reads mapped: 89.27
Strain: La3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La3 | M.orygis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.86 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5516 | p.Ile93Val | missense_variant | 1.0 |
gyrB | 5602 | c.363C>T | synonymous_variant | 1.0 |
gyrB | 6109 | c.870G>A | synonymous_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrB | 6717 | p.Ile493Thr | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8930 | c.1629C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490661 | c.-122_-121insGCGAGC | upstream_gene_variant | 0.96 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
fgd1 | 491749 | p.Leu323Phe | missense_variant | 1.0 |
rpoB | 762352 | c.2557_2562dupGACGAG | conservative_inframe_insertion | 0.98 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.98 |
mmpL5 | 778086 | c.394dupG | frameshift_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472673 | n.828T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474420 | n.763C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475539 | n.1882A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476664 | n.3007T>G | non_coding_transcript_exon_variant | 1.0 |
inhA | 1673680 | c.-522C>G | upstream_gene_variant | 1.0 |
rpsA | 1834363 | c.822G>A | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154707 | p.Val469Leu | missense_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169279 | c.1312_1333delAACAATGGTGTCTTTTACCGTG | frameshift_variant | 1.0 |
PPE35 | 2170669 | c.-57G>A | upstream_gene_variant | 0.99 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289978 | c.-737T>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726378 | c.186T>A | synonymous_variant | 1.0 |
folC | 2746391 | p.Val403Ala | missense_variant | 1.0 |
Rv2752c | 3067009 | c.-818A>G | upstream_gene_variant | 1.0 |
thyX | 3067812 | p.Gln45Arg | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475113 | c.1107G>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fprA | 3475323 | c.1317T>C | synonymous_variant | 1.0 |
Rv3236c | 3612694 | c.423T>C | synonymous_variant | 1.0 |
fbiB | 3641584 | p.Val17Ala | missense_variant | 1.0 |
clpC1 | 4039853 | c.852G>A | synonymous_variant | 1.0 |
panD | 4044134 | p.Asp50Asn | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244154 | p.Thr308Ala | missense_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4268616 | p.Gly74Asp | missense_variant | 0.18 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326398 | p.Gln359Arg | missense_variant | 1.0 |
ethA | 4327042 | p.Asp144Asn | missense_variant | 1.0 |
ethA | 4328211 | c.-738A>G | upstream_gene_variant | 0.98 |
whiB6 | 4338269 | p.Gly85Ser | missense_variant | 1.0 |
whiB6 | 4338527 | c.-6T>C | upstream_gene_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |