Run ID: ERR2512942
Sample name:
Date: 17-08-2022 18:31:15
Number of reads: 5235626
Percentage reads mapped: 99.63
Strain: M.orygis
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
M.orygis | M. orygis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5516 | p.Ile93Val | missense_variant | 1.0 |
gyrB | 6109 | c.870G>A | synonymous_variant | 0.99 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrB | 6717 | p.Ile493Thr | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8930 | c.1629C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490661 | c.-122_-121insGCGAGC | upstream_gene_variant | 0.96 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
fgd1 | 491749 | p.Leu323Phe | missense_variant | 1.0 |
mshA | 576526 | c.1179C>T | synonymous_variant | 0.17 |
rpoB | 762352 | c.2557_2562dupGACGAG | conservative_inframe_insertion | 0.96 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 0.98 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475539 | n.1882A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476664 | n.3007T>G | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673680 | p.Pro81Ala | missense_variant | 1.0 |
rpsA | 1834363 | c.822G>A | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154707 | p.Val469Leu | missense_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 0.99 |
pncA | 2289978 | c.-737T>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726378 | c.186T>A | synonymous_variant | 1.0 |
folC | 2746391 | p.Val403Ala | missense_variant | 1.0 |
thyX | 3067812 | p.Gln45Arg | missense_variant | 0.99 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
fbiB | 3641584 | p.Val17Ala | missense_variant | 1.0 |
panD | 4044134 | p.Asp50Asn | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.99 |
embC | 4242485 | p.Glu875Lys | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244154 | p.Thr308Ala | missense_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247189 | p.Ile226Val | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269351 | c.483C>T | synonymous_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
ubiA | 4269606 | c.228T>C | synonymous_variant | 0.99 |
ethA | 4327042 | p.Asp144Asn | missense_variant | 1.0 |
ethA | 4328211 | c.-738A>G | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |