TB-Profiler result

Run: ERR4769553
Summary

Run ID: ERR4769553

Sample name:

Date: 01-04-2023 06:44:16

Number of reads: 36517

Percentage reads mapped: 2.3

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.98
lineage4.9 Euro-American (H37Rv-like) T1 None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.57 rifampicin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.85 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 1.0 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 760940 c.1134G>C synonymous_variant 0.67
rpoB 760946 c.1140A>G synonymous_variant 0.67
rpoB 760953 p.Ile383Val missense_variant 0.67
rpoB 760958 c.1152G>C synonymous_variant 0.67
rpoB 760959 p.Val385Thr missense_variant 0.67
rpoB 760965 p.Met387Leu missense_variant 0.67
rpoB 760970 c.1164G>C synonymous_variant 0.75
rpoB 760973 c.1167G>C synonymous_variant 0.75
rpoB 760982 c.1176G>C synonymous_variant 0.83
rpoB 760985 c.1179G>C synonymous_variant 0.71
rpoB 760991 c.1185G>C synonymous_variant 0.83
rpoB 760997 c.1191G>C synonymous_variant 0.86
rpoB 761006 c.1200C>G synonymous_variant 0.86
rpoB 761013 p.Val403Ile missense_variant 0.71
rpoB 761027 c.1221A>G synonymous_variant 0.88
rpoB 761036 c.1230G>C synonymous_variant 0.71
rpoB 761037 c.1231T>C synonymous_variant 0.86
rpoB 761046 p.Ile414Val missense_variant 0.71
rpoB 761051 c.1245G>A synonymous_variant 0.83
rpoB 761054 c.1248G>C synonymous_variant 0.86
rpoB 761057 c.1251G>C synonymous_variant 0.86
rpoB 761063 c.1257C>G synonymous_variant 0.83
rpoB 761071 p.Lys422Arg missense_variant 0.2
rpoB 761084 c.1278C>A synonymous_variant 0.25
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 1.0
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761126 c.1320G>C synonymous_variant 0.57
rpoB 761132 c.1326G>C synonymous_variant 0.57
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.86
rpoB 761150 c.1344A>C synonymous_variant 0.8
rpoB 761162 c.1356G>C synonymous_variant 0.67
rpoB 761165 c.1359G>C synonymous_variant 0.67
rpoB 761171 c.1365C>T synonymous_variant 0.67
rpoB 761180 c.1374A>C synonymous_variant 0.67
rpoB 761189 c.1383T>C synonymous_variant 0.67
rpoB 761192 c.1386C>G synonymous_variant 0.5
rpoB 761195 c.1389G>C synonymous_variant 0.67
rpoB 761196 p.Leu464Val missense_variant 0.5
rpoB 761213 c.1407G>C synonymous_variant 0.6
rpoC 762923 c.-447C>G upstream_gene_variant 0.5
rpoC 762926 c.-444C>G upstream_gene_variant 0.5
rpoC 762959 c.-411G>C upstream_gene_variant 0.5
rpoC 762989 c.-381G>A upstream_gene_variant 0.75
rpoC 762995 c.-375G>T upstream_gene_variant 0.75
rpoB 763005 p.Cys1067Val missense_variant 0.75
rpoC 763013 c.-357C>G upstream_gene_variant 0.75
rpoB 763014 p.Met1070Leu missense_variant 0.75
rpoB 763017 p.Gln1071Glu missense_variant 0.75
rpoC 763022 c.-348C>A upstream_gene_variant 0.75
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.8
rpoB 763038 p.Thr1078Ala missense_variant 0.8
rpoC 763043 c.-327G>C upstream_gene_variant 1.0
rpoC 763052 c.-318G>C upstream_gene_variant 0.5
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 1.0
rpoC 763058 c.-312C>G upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoB 763075 p.Thr1090Ile missense_variant 1.0
rpoB 763077 p.Val1091Leu missense_variant 1.0
rpoC 763088 c.-282C>G upstream_gene_variant 0.5
rpoC 763094 c.-276G>C upstream_gene_variant 0.5
rpoC 763115 c.-255T>C upstream_gene_variant 0.67
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763551 p.Tyr61Ser missense_variant 1.0
rpoC 763570 c.201G>A synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 1.0
rpoC 763585 c.216C>A synonymous_variant 1.0
rpoC 763589 p.Ile74Val missense_variant 1.0
rpoC 763609 c.240C>G synonymous_variant 1.0
rpoC 763636 c.267T>C synonymous_variant 1.0
rpoC 763642 c.273G>C synonymous_variant 1.0
rpoC 763660 c.291T>C synonymous_variant 1.0
rpoC 763666 c.297G>C synonymous_variant 1.0
rpoC 763699 c.330G>C synonymous_variant 1.0
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 1.0
rpoC 763711 c.342G>C synonymous_variant 1.0
rpoC 763714 c.345G>C synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763720 c.351G>C synonymous_variant 1.0
rpoC 763723 c.354G>C synonymous_variant 1.0
rpoC 763727 p.Leu120Met missense_variant 1.0
rpoC 763732 c.363C>G synonymous_variant 1.0
rpoC 763744 c.375G>C synonymous_variant 1.0
rpoC 763751 p.Ile128Val missense_variant 1.0
rpoC 763765 c.396T>C synonymous_variant 1.0
rpoC 763772 p.Val135Met missense_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 0.67
rpoC 764660 p.Val431Ile missense_variant 0.71
rpoC 764668 c.1299C>T synonymous_variant 0.71
rpoC 764706 p.Leu446Gln missense_variant 0.8
rpoC 764716 c.1347G>C synonymous_variant 0.89
rpoC 764740 p.Met457Ile missense_variant 0.9
rpoC 764746 c.1377G>C synonymous_variant 1.0
rpoC 764749 c.1380G>C synonymous_variant 1.0
rpoC 764750 p.Val461Ile missense_variant 1.0
rpoC 764760 p.Asn464Ser missense_variant 1.0
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764767 c.1398G>T synonymous_variant 1.0
rpoC 764797 c.1428G>C synonymous_variant 1.0
rpoC 764803 c.1434C>G synonymous_variant 1.0
rpoC 764804 p.Gln479Ser missense_variant 1.0
rpoC 764812 c.1443C>G synonymous_variant 1.0
rpoC 764815 c.1446A>G synonymous_variant 1.0
rpoC 764824 c.1455T>C synonymous_variant 1.0
rpoC 764833 c.1464A>G synonymous_variant 0.75
rpoC 764837 p.Val490Ile missense_variant 0.75
rpoC 764843 p.Ala492Arg missense_variant 0.67
rpoC 764850 p.His494Arg missense_variant 0.67
rpoC 764854 c.1485G>C synonymous_variant 1.0
rpoC 764857 c.1488G>T synonymous_variant 0.67
rpoC 764858 c.1489T>C synonymous_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 0.8
rpsL 781817 c.258G>T synonymous_variant 0.8
rpsL 781829 c.270G>C synonymous_variant 0.8
rpsL 781832 c.273T>C synonymous_variant 0.8
rpsL 781835 c.276T>C synonymous_variant 0.8
rpsL 781838 c.279G>T synonymous_variant 0.8
rpsL 781851 p.Ile98Val missense_variant 0.8
rpsL 781859 c.300T>C synonymous_variant 0.8
rpsL 781860 p.Ser101Ala missense_variant 0.8
rpsL 781868 c.309T>C synonymous_variant 0.67
rpsL 781871 c.312G>C synonymous_variant 0.67
rpsL 781876 p.Gly106Ala missense_variant 0.67
rpsL 781892 c.333A>G synonymous_variant 0.5
rpsL 781898 c.339A>T synonymous_variant 0.5
rpsL 781907 c.348T>C synonymous_variant 0.5
rpsL 781916 c.357T>G synonymous_variant 0.5
rpsL 781921 p.Lys121Met missense_variant 0.4
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472256 n.411T>C non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.67
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.75
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.75
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.75
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.8
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.33
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.29
rrs 1472645 n.800G>C non_coding_transcript_exon_variant 0.33
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.75
rrs 1472660 n.815T>A non_coding_transcript_exon_variant 1.0
rrs 1472666 n.821G>T non_coding_transcript_exon_variant 0.67
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 1.0
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.67
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.67
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 1.0
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 1.0
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.67
rrs 1472694 n.849C>A non_coding_transcript_exon_variant 0.67
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.67
rrs 1472714 n.869A>T non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.6
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.4
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.6
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.4
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.6
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.6
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.4
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.6
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.6
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.6
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.29
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.67
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.83
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.83
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.83
rrs 1473083 n.1238G>A non_coding_transcript_exon_variant 0.67
rrs 1473097 n.1252G>A non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.33
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.33
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.83
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.83
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.83
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.83
rrs 1473128 n.1283C>T non_coding_transcript_exon_variant 0.5
rrs 1473134 n.1289T>C non_coding_transcript_exon_variant 0.22
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.78
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 0.75
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.71
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.71
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 1.0
rrs 1473288 n.1443C>G non_coding_transcript_exon_variant 1.0
rrs 1473289 n.1444T>C non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>A non_coding_transcript_exon_variant 1.0
rrs 1473291 n.1446G>A non_coding_transcript_exon_variant 1.0
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 1.0
rrs 1473324 n.1479G>A non_coding_transcript_exon_variant 1.0
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 0.67
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.75
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.8
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.8
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.8
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.8
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.8
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.86
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.86
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.86
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.86
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.86
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.86
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 1.0
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 1.0
rrl 1474601 n.944C>T non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 1.0
rrl 1474675 n.1018C>A non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.8
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.67
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.67
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.67
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.67
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.67
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.67
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 1.0
rrl 1474752 n.1096delA non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474770 n.1113G>A non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 1.0
rrl 1474778 n.1121C>T non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 1.0
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 1.0
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 1.0
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 1.0
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 1.0
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 1.0
rrl 1475084 n.1427G>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>G non_coding_transcript_exon_variant 0.67
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 1.0
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.67
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 1.0
rrl 1475777 n.2120A>C non_coding_transcript_exon_variant 0.4
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.5
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.83
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.33
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.5
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.5
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.6
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.5
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.5
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.4
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.4
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 1.0
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 1.0
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 1.0
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 1.0
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 1.0
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476080 n.2423T>A non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476127 n.2470C>A non_coding_transcript_exon_variant 0.67
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.75
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.3
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.33
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.27
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.57
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.57
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.71
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.62
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.73
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.77
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.6
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.67
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.62
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.43
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.57
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.4
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.75
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.67
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.75
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.75
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476543 n.2886G>A non_coding_transcript_exon_variant 0.5
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.5
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.67
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 1.0
rpsA 1833649 c.108C>A synonymous_variant 0.67
rpsA 1833653 p.Ile38Leu missense_variant 0.67
rpsA 1833656 p.Val39Ile missense_variant 0.67
rpsA 1833661 c.120A>G synonymous_variant 0.67
rpsA 1833668 p.Ile43Val missense_variant 0.67
rpsA 1833676 c.135A>G synonymous_variant 0.67
rpsA 1833677 p.Val46Ile missense_variant 0.67
rpsA 1833694 c.153G>C synonymous_variant 0.67
rpsA 1833703 c.162C>T synonymous_variant 0.67
rpsA 1833704 p.Ile55Val missense_variant 0.67
rpsA 1833709 c.168C>T synonymous_variant 0.67
rpsA 1833721 c.180A>G synonymous_variant 0.67
rpsA 1833724 c.183C>T synonymous_variant 0.67
rpsA 1833727 c.186G>C synonymous_variant 0.67
rpsA 1833734 p.Ala65Ser missense_variant 0.67
rpsA 1833742 c.201A>G synonymous_variant 0.67
rpsA 1833745 c.204G>C synonymous_variant 0.67
rpsA 1833763 c.222C>G synonymous_variant 0.67
rpsA 1833769 c.228C>G synonymous_variant 1.0
rpsA 1833771 p.Asn77Thr missense_variant 1.0
rpsA 1834859 p.Ala440Thr missense_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2156465 c.-354C>T upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4039904 c.801A>G synonymous_variant 1.0
clpC1 4039931 c.774T>A synonymous_variant 0.67
clpC1 4039934 c.771G>C synonymous_variant 0.67
clpC1 4039937 p.Val256Ile missense_variant 0.67
clpC1 4039940 c.765G>C synonymous_variant 0.67
clpC1 4039946 c.759A>C synonymous_variant 0.67
clpC1 4039949 c.756G>C synonymous_variant 0.67
clpC1 4039952 c.753T>C synonymous_variant 0.67
clpC1 4039955 c.750G>C synonymous_variant 0.67
clpC1 4039958 c.747G>C synonymous_variant 0.67
clpC1 4039982 c.723G>C synonymous_variant 0.8
clpC1 4039994 p.Glu237Asp missense_variant 0.75
clpC1 4040001 p.His235Arg missense_variant 0.8
clpC1 4040009 c.696C>G synonymous_variant 0.8
clpC1 4040015 c.690G>C synonymous_variant 0.8
clpC1 4040018 c.687G>C synonymous_variant 0.8
clpC1 4040021 c.684A>C synonymous_variant 0.8
clpC1 4040024 c.681A>G synonymous_variant 0.8
clpC1 4040033 c.672G>C synonymous_variant 0.8
clpC1 4040063 c.642G>C synonymous_variant 0.8
clpC1 4040069 c.636G>C synonymous_variant 0.8
clpC1 4040083 p.Thr208Ser missense_variant 1.0
clpC1 4040087 c.618G>T synonymous_variant 1.0
clpC1 4040090 c.615T>C synonymous_variant 1.0
clpC1 4040096 p.Val203Ile missense_variant 1.0
clpC1 4040114 p.Ile197Met missense_variant 1.0
clpC1 4040117 c.588A>G synonymous_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0