Run ID: SRR21240239
Sample name:
Date: 04-04-2023 00:13:10
Number of reads: 1421056
Percentage reads mapped: 86.85
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6438 | p.Pro400Arg | missense_variant | 0.83 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472705 | n.860G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472779 | n.934G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476269 | n.2612C>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476274 | n.2617G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.1 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ribD | 2986827 | c.-12G>A | upstream_gene_variant | 0.33 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4247987 | p.Val492Met | missense_variant | 0.28 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |