Run ID: SRR6896532
Sample name:
Date: 04-04-2023 18:09:01
Number of reads: 1210390
Percentage reads mapped: 86.92
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.14 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476251 | n.2594T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.1 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
whiB6 | 4338602 | c.-81A>T | upstream_gene_variant | 1.0 |