Run ID: SRR13199739
Sample name:
Date: 03-04-2023 08:23:30
Number of reads: 1206914
Percentage reads mapped: 77.5
Strain: La1.7.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.7 | M.bovis | None | None | 1.0 |
La1.7.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 762926 | c.-444C>T | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1305494 | c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT | frameshift_variant&stop_lost&splice_region_variant | 0.36 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472518 | n.673G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472669 | n.824_825insTAG | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472677 | n.832C>G | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472678 | n.833T>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472679 | n.834_835insAC | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472684 | n.841_846delGATCCG | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472697 | n.852T>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472701 | n.856T>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472705 | n.860G>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472779 | n.934G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472836 | n.991G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472846 | n.1002delG | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472849 | n.1004C>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472861 | n.1016G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472864 | n.1019C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472869 | n.1024G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472870 | n.1025T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472873 | n.1028C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472875 | n.1030T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472877 | n.1032T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472878 | n.1034delT | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472954 | n.1109T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474798 | n.1141C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474804 | n.1147C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474920 | n.1263G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474927 | n.1271delC | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474931 | n.1274G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474938 | n.1281G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476135 | n.2478T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476181 | n.2524A>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476229 | n.2572C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476608 | n.2951C>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476614 | n.2957A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476621 | n.2964C>A | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476624 | n.2967T>G | non_coding_transcript_exon_variant | 0.1 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.1 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.1 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fbiB | 3642478 | p.Asp315Ala | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
fbiC | 1305494 | c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | frameshift_variant&stop_lost&splice_region_variant | 1.0 |