ERR5864638
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419562
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR7911168
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR1166920
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232713
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232460
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232691
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163126
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169074
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665874
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665643
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665597
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232762
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR067701
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR13232519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917716
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419534
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR13232705
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801483
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7069105
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232553
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172449
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10867702
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156811
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1163432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169070
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830830
|
Pre-XDR-TB
|
lineage4.2.2.2
|
et
|
ERR5864642
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02058520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665964
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184034
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513436
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285186
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159279
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7975638
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911736
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
ERR4813314
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR8665701
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3085287
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159283
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163080
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458447
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10877885
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22873607
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR26937071
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
SRR28706671
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600579
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1172064
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3275336
|
MDR-TB
|
lineage4.2.2.2
|
nl
|
SRR10397226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665970
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232754
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7655469
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169144
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665601
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502899
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159293
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798392
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR8665565
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665599
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419656
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1181134
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510625
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR8665519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665583
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665916
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162491
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807559
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737654
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR8665647
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665931
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665980
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163139
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181041
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169025
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169319
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR133942
|
MDR-TB
|
lineage4.1.2.1
|
ru
|
SRR1163198
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR958488
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419541
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1180957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22351872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806696
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR5864639
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911740
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
ERR4830805
|
MDR-TB
|
lineage4.2.2.2
|
et
|
ERR4831636
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR8665890
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419631
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR13232778
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169143
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1174821
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748321
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR2653112
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR8665782
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665909
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2677446
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR8665917
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169128
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181305
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665515
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665700
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10610336
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1163211
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830799
|
MDR-TB
|
lineage4.2.2.2
|
et
|
SRR1165366
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR1159150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510674
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
it
|
ERR2516390
|
MDR-TB
|
lineage2.2.1
|
be
|
SRR7070112
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232715
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163405
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1167151
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR8665644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159818
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162897
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR13232512
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290598
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SAMN02419585
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232700
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665753
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665995
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232582
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351427
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1169246
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370247
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10610176
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1169135
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831102
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665662
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419596
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR8665847
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419655
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR4831658
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR8665831
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665792
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865968
|
MDR-TB
|
lineage4.8
|
None
|
ERR8665912
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169073
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02086226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797457
|
XDR-TB
|
lineage4.8
|
in
|
ERR8665758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665598
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133878
|
MDR-TB
|
lineage4.1.2.1
|
ru
|
SRR13232664
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665684
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169044
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232545
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232556
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1159959
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665775
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665922
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751545
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR8665842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3148199
|
MDR-TB
|
lineage4.3.3
|
mx
|
SRR1181073
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553250
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737624
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1162505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180989
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911422
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
SRR1163397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR067697
|
MDR-TB
|
lineage4.1.2.1
|
ru
|
SRR1181202
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513994
|
MDR-TB
|
lineage2.2.1
|
gb
|
SAMN02419650
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR2516899
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR8665837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181154
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370203
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665577
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665653
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665791
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290600
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR2517569
|
MDR-TB
|
lineage4.2.2.2
|
nl
|
ERR5865702
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1172351
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830845
|
MDR-TB
|
lineage4.2.2.2
|
et
|
SRR25827584
|
Pre-XDR-TB
|
lineage4.4.1.2;lineage4.8
|
None
|
ERR4797748
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR1162947
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070509
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864641
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02058521
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551464
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665820
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419571
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082627
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172180
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665923
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169086
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172405
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24710015
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828082
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828124
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665617
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665767
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665799
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665955
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1181150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232564
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924712
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284525
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671756
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR7070163
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665528
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665742
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665800
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665636
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045461
|
HR-TB
|
lineage2.2.1.2
|
None
|
ERR4799073
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR13232749
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419658
|
MDR-TB
|
lineage2.2.1
|
by
|
SAMN02058522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911228
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMN02419674
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR4132455
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665835
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069238
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166935
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SAMN02414970
|
Pre-XDR-TB
|
lineage4.2.2.2
|
se
|
SAMN02419538
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419593
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1159661
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232743
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172059
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165646
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6866283
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2510478
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR13232695
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924718
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232784
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163103
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665635
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665752
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665759
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665766
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516514
|
Pre-XDR-TB
|
lineage4.1.2
|
pe
|
SRR1181205
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665897
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041774
|
RR-TB
|
lineage4.4.1.1
|
rs
|
ERR551465
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869253
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865701
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1158990
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665748
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419615
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1163177
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551465_ERR551464
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172411
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665930
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911488
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR6458385
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665654
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR958483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181307
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419649
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1181241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181278
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516960
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR1166917
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081873
|
MDR-TB
|
lineage4.1.2.1;lineage4.2.1
|
None
|
SRR29772757
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1163299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665984
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665579
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181082
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162966
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172117
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665852
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665983
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133800
|
MDR-TB
|
lineage4.1.2.1
|
ru
|
ERR9907798
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4798607
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR108474
|
MDR-TB
|
lineage4.1.2.1
|
ru
|
SRR1163114
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665596
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR067603
|
MDR-TB
|
lineage4.1.2.1
|
ru
|
ERR2446183
|
MDR-TB
|
lineage4.2.2.2
|
nl
|
ERR8665584
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232583
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831099
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232742
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096523
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR8665899
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864637
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917749
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1181208
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR108480
|
Pre-XDR-TB
|
lineage4.1.2.1
|
ru
|
SRR1163314
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232722
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9907795
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4830803
|
Pre-XDR-TB
|
lineage4.2.2.2
|
et
|
ERR3794361
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232511
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232537
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159034
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159351
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498690
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796828
|
MDR-TB
|
lineage3
|
in
|
SRR29539529
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070640
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR924713
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011971
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR551281
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284580
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513229
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232517
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181094
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159393
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133940
|
MDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR25827582
|
XDR-TB
|
lineage3;lineage4.8
|
None
|
ERR13289314
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR2041775
|
RR-TB
|
lineage4.4.1.1
|
rs
|
SRR1167382
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419567
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419595
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419651
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR8665781
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419638
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR4830822
|
Pre-XDR-TB
|
lineage4.2.2.2
|
et
|
SRR1162953
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163298
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665908
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232464
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665615
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665815
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1163330
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10869177
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172339
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232549
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533963
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR13232506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159003
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159108
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665797
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665516
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665749
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458441
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181124
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5341329
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR1158874
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665996
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR958489
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232499
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665554
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665616
|
XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419659
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR8665885
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665529
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419614
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02403560
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR8665881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796788
|
MDR-TB
|
lineage3
|
in
|
ERR11043166
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR958501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665869
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|