ERR8665701
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665983
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1158950
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162980
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1180984
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419628
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1180936
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181149
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458447
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232439
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924717
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665856
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1168958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665944
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665584
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232583
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172351
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665970
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917687
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR13232754
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163081
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181247
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232480
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419612
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232759
|
XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR7070509
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665601
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797223
|
XDR-TB
|
lineage3.1.2
|
in
|
ERR8665825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232708
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159053
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419656
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1169050
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181134
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419569
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232746
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924713
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR958498
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419609
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419662
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232517
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232740
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR13232751
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232781
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR924712
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419541
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1180957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4132457
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665508
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665800
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419638
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232778
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181329
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665782
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665909
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419658
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1180976
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184035
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169128
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181305
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665615
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665515
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163330
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163348
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172339
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665543
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516390
|
MDR-TB
|
lineage2.2.1
|
be
|
SRR7070112
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232715
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1158988
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159661
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1183962
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159003
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159108
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665797
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159818
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232688
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232512
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232743
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172059
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419585
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1158874
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665996
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232695
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232784
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665642
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665860
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR8665971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419659
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR8665662
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419596
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR6458450
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419655
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1166920
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232713
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419667
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1159283
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163080
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4132458
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159349
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181154
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163114
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181080
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665596
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665577
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665614
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665653
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172219
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917749
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1181208
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163314
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232722
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162947
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665817
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02058521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159293
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665820
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419571
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419640
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR8665565
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232537
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665599
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665802
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172180
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498690
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665583
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665679
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665916
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169120
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159154
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162491
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163310
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163326
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169086
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172405
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665647
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665931
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665883
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665980
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159760
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163139
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169088
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172269
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181041
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284580
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665617
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665767
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665799
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665955
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1181150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181045
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181094
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159294
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163313
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665715
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665845
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665857
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159393
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184125
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR958488
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070163
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458463
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665528
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665818
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232586
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419567
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419595
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419651
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR24710284
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1174821
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159389
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162953
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163298
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665908
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232464
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665815
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665700
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163406
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419629
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1158871
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159986
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163211
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232549
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510674
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
it
|
ERR8665990
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419538
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR8665644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1183959
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184036
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163325
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169027
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665806
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665695
|
XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR8665509
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665753
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665828
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665995
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232582
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419570
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1163002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163103
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169135
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665885
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172072
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665529
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419614
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1159384
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665694
|
XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR8665847
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR958501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419533
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419562
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR8665766
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665795
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1174857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665897
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419664
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1180963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163126
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169074
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665804
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665874
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1159738
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665643
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665684
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181196
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665945
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232545
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917716
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419534
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1169045
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069105
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232684
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458419
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552141
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR6458385
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458403
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665654
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419606
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR8665714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159262
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184034
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665518
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665984
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513994
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR1163023
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665579
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162966
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7975638
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172117
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665852
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796863
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
ERR8665912
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665680
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232691
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169073
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665862
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR13232469
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232762
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232705
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1158990
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159790
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458387
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1158898
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159959
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665521
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665748
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665775
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665891
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181103
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665922
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232553
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172411
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172449
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665930
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665803
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR8665842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181073
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553250
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR958483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419649
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1162505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665964
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181278
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166917
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159122
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458449
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285186
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419597
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419676
|
MDR-TB
|
lineage2.2.1
|
by
|
SAMN02419650
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232416
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172064
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831099
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665741
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232742
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665791
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665899
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419558
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1172264
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163429
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665703
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7655469
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169144
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458454
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458384
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232511
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419547
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR4132459
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419590
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082627
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159034
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159351
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162498
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163050
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180923
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163145
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665923
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184123
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070640
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551281
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1158907
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163387
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169025
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232769
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419588
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1163198
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172238
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232564
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458393
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419565
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1168992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1183663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181007
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665890
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419631
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR1181072
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665781
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665636
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169143
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232749
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2677446
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SAMN02058522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665688
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665917
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911228
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMN02419583
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419674
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR4132455
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665796
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665812
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665835
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069238
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665517
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419593
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1163405
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232738
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181093
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458388
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665516
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665749
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458441
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181124
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181132
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232700
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924718
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR958489
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232499
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24710061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163369
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665554
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665616
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665641
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163336
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831102
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR924714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665702
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159044
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665831
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665869
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665635
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665752
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665759
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172387
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1172392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181205
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665792
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232460
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02086226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665598
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665544
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232664
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419587
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1169044
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665578
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232556
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR13232515
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419615
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1163177
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181155
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169070
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172368
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181307
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162531
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02058520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419548
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419556
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1180989
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419602
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1181202
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181082
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458460
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917718
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1159279
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162485
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665882
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|