Rv2477c - c.999G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
8 Sensitive
1 RR-TB
16 HR-TB
10 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| 12 | |
| lineage4.1.2 | 1 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 7 |
| lineage3 | 1 |
| lineage4.1.2.1 | 4 |
| lineage6.3.1 | 1 |
| lineage4.3.4.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.9 | 11 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| lineage2.1;lineage4.9 | 3 |
| lineage6 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage7 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti | 1 |
| lineage4.8 | 2 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3 | 1 |
| La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 77 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4797201 | Other | None | ERR4800341 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4810741 | HR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811142 | RR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811311 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR9117721 | HR-TB | None | ERR9787165 | Other | lineage6 | None | ERR13285191 | Sensitive | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR29096683 | Sensitive | lineage1.1.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR266124 | Other | M.canetti | None | ERR12015083 | Other | lineage4.8 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR4817893 | Other | lineage4.8 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR1172234 | Other | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR27450479 | Sensitive | La3 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR176793 | Other | lineage4.1.1.1 | None |
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