Rv0667 - c.2604T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
37 Sensitive
5 RR-TB
43 HR-TB
11 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 82 |
| La1.7;lineage4.9 | 3 |
| lineage4 | 2 |
| La1;lineage4.9 | 2 |
| lineage2.2.1 | 15 |
| 7 | |
| lineage4.3.4 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.8.1 | 1 |
| lineage2.1;lineage4.9 | 5 |
| lineage2.2;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.2.1 | 2 |
| lineage2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.9;lineage7 | 5 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2 | 1 |
| lineage4.1.2.1 | 2 |
| lineage1.1.1;lineage4 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.5 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.4.2 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 163 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736831 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5535933 | Other | lineage4.9 | None | SRR7240476 | Other | La1.8.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4769457 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR3675387 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811311 | Other | None | SRR1196546 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR13285191 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR5341330 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR752229 | Other | lineage4.5 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None |
|---|
