Rv0006 - c.982_984delATCinsCG
Drug resistance types
10 Sensitive
18 RR-TB
47 HR-TB
47 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 6 |
| M.canetti;lineage2.1;lineage4.9 | 14 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage4.9 | 74 |
| lineage4.3.4.2.1 | 1 |
| La2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage4 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 3 |
| La3;lineage4.3.4 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.2.1 | 6 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage4.5 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage4.8.1 | 1 |
| lineage2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage4.8 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 6 |
| lineage2.2.1.1 | 1 |
| 5 | |
| La3;lineage4.9 | 3 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.3.2.1 | 2 |
| lineage4.1;lineage4.8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1.1 | 1 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| La1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| La1.7;lineage4.9 | 4 |
| La2;lineage2.2 | 1 |
| lineage2.2 | 3 |
| La3;lineage1.1.2 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 1 |
| lineage4.1.3 | 1 |
| lineage4.3.3 | 1 |
| La1.7;lineage4.2 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 201 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR349265 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR6046593 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR1172234 | Other | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR4821053 | RR-TB | lineage3 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675269 | RR-TB | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR751326 | Other | lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4816478 | HR-TB | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR3797083 | RR-TB | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR736848 | Other | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675311 | Other | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
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