Rv0001 - c.1218C>G
Drug resistance types
0 Sensitive
1 RR-TB
12 HR-TB
2 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
60 Other
lineage Counts
| lineage | Count |
|---|---|
| 11 | |
| lineage4.9 | 17 |
| lineage3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.2.1 | 4 |
| lineage4.8 | 2 |
| lineage2.1;lineage4.9 | 9 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.2;lineage4.9 | 1 |
| lineage2.1 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.7 | 1 |
| La1.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 3 |
| lineage6.3.1 | 1 |
| lineage4 | 2 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 76 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7496517 | Other | None | ERR9787197 | Other | None | SRR3675275 | Other | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786569 | Other | lineage4.8 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1165699 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496523 | Other | lineage4.7 | None | ERR9117709 | Other | None | SRR3675236 | Other | None | SRR23961549 | Other | La1.2 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675457 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR7496509 | Other | None | SRR3675572 | Other | None | SRR7535086 | Other | None | ERR4407463 | HR-TB | None | ERR4816999 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675214 | Other | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046594 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR6789626 | Other | None | SRR18213713 | HR-TB | None |
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