EBG00000313325 - n.908A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
5 RR-TB
30 HR-TB
94 MDR-TB
34 Pre-XDR-TB
1 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 5 |
| lineage1.2.1.2.1 | 9 |
| lineage1.1.1.1 | 9 |
| lineage4.3.4.2.1 | 15 |
| lineage1.2.2.2 | 8 |
| lineage4.1.2.1 | 12 |
| lineage2.2.1 | 9 |
| lineage1.2.1.2 | 7 |
| lineage4.6.1.2 | 11 |
| lineage4.2.1.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.2.2 | 16 |
| La3;lineage2.2.2 | 1 |
| lineage1.1.3 | 2 |
| lineage3 | 7 |
| lineage4.5 | 5 |
| lineage4.8 | 13 |
| lineage4.2.2.2 | 6 |
| lineage1.1.2 | 11 |
| lineage4.4.2 | 5 |
| lineage3.1.1 | 2 |
| lineage4.2.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.2.2 | 1 |
| lineage4.6.1.2;lineage4.8.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.9 | 1 |
| lineage1.2.2.2;lineage4 | 1 |
| lineage3.1.3 | 1 |
| lineage3.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 170 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6785493 | MDR-TB | lineage4.3.3 | None | SRR19320495 | HR-TB | lineage1.2.1.2.1 | None | SRR7496483 | HR-TB | lineage1.1.1.1 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR3132234 | HR-TB | lineage1.2.2.2 | None | SRR22251356 | HR-TB | lineage1.1.1.1 | None | ERR11551989 | MDR-TB | lineage4.1.2.1 | None | DRR130159 | RR-TB | lineage2.2.1 | None | ERR13279806 | MDR-TB | lineage4.1.2.1 | None | SRR6930927 | MDR-TB | lineage1.2.1.2 | None | SRR29230780 | MDR-TB | lineage4.6.1.2 | None | SRR28706614 | MDR-TB | lineage4.2.1.1 | None | SRR25827360 | Pre-XDR-TB | lineage3;lineage4 | None | ERR3256127 | MDR-TB | lineage4.1.1.3 | ph | ERR3256128 | MDR-TB | lineage4.1.1.3 | ph | ERR13243563 | MDR-TB | lineage2.2.2 | None | ERR2843437 | Sensitive | lineage1.2.1.2.1 | None | DRR130165 | Pre-XDR-TB | lineage2.2.2 | None | SRR1140717 | MDR-TB | lineage4.6.1.2 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR29017177 | MDR-TB | lineage1.1.3 | None | SRR29051004 | Sensitive | lineage1.2.1.2.1 | None | SRR3105756 | Pre-XDR-TB | lineage3 | None | SRR30180348 | Pre-XDR-TB | lineage4.5 | None | SRR29017248 | MDR-TB | lineage4.8 | None | SRR29914431 | Pre-XDR-TB | lineage2.2.2 | None | ERR9125825 | HR-TB | lineage1.2.1.2 | None | ERR13243561 | Pre-XDR-TB | lineage2.2.2 | None | ERR2510600 | Pre-XDR-TB | lineage3 | pk | ERR4796768 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR1654664 | MDR-TB | lineage4.6.1.2 | None | ERR4799563 | Pre-XDR-TB | lineage1.1.2 | in | ERR13284307 | MDR-TB | lineage2.2.1 | None | SRR6485031 | MDR-TB | lineage4.3.3 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR4799336 | Pre-XDR-TB | lineage4.2.2.2 | in | SRR21887643 | MDR-TB | lineage2.2.2 | None | ERR4796570 | MDR-TB | lineage3 | in | ERR2124092 | HR-TB | lineage1.2.2.2 | None | SRR8651643 | MDR-TB | lineage4.4.2 | cn | SRR27450124 | HR-TB | lineage1.1.1.1 | None | ERR13194049 | MDR-TB | lineage2.2.2 | None | ERR13265094 | Pre-XDR-TB | lineage2.2.2 | None | SRR28393389 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3287611 | MDR-TB | lineage4.3.3 | pe | SRR1167370 | MDR-TB | lineage3.1.1 | None | SRR1172853 | HR-TB | lineage1.1.2 | None | SRR28393981 | MDR-TB | lineage4.1.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR2707012 | MDR-TB | lineage4.6.1.2 | cd | ERR7911507 | MDR-TB | lineage2.2.1 | vn | SRR22424788 | MDR-TB | lineage1.1.2 | None | SRR25206921 | MDR-TB | lineage4.5 | None | ERR2517065 | Pre-XDR-TB | lineage4.2.1 | gb | ERR2516604 | MDR-TB | lineage3 | nl | SRR29016870 | MDR-TB | lineage1.2.2.2 | None | SRR9613552 | MDR-TB | lineage2.2.2 | None | SRR29017253 | MDR-TB | lineage1.2.2.2 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR18054800 | MDR-TB | lineage2.2.2 | None | SRR23252659 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR1140750 | MDR-TB | lineage4.3.4.2.1 | None | SRR1175300 | HR-TB | lineage1.1.2 | None | ERR4830967 | Pre-XDR-TB | lineage4.1.2.1 | np | SRR26937048 | HR-TB | lineage1.1.1.1 | None | SRR22249399 | HR-TB | lineage1.2.1.2.1 | None | SRR29053314 | HR-TB | lineage1.2.1.2.1 | None | SRR29093376 | MDR-TB | lineage2.2.2 | None | SRR29772518 | MDR-TB | lineage1.1.2 | None | SRR11567783 | MDR-TB | lineage4.4.2 | None | ERR8774514 | MDR-TB | lineage4.6.2.2 | None | SRR16089912 | HR-TB | lineage4.8 | None | SRR29017428 | MDR-TB | lineage1.2.2.2 | None | ERR6336804 | HR-TB | lineage1.2.1.2 | None | SRR1049624 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02381010 | MDR-TB | lineage4.3.4.2.1 | None | ERR4813844 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR13193757 | MDR-TB | lineage4.2.2 | None | ERR6358762 | MDR-TB | lineage4.6.1.2;lineage4.8.1 | None | ERR13260010 | Pre-XDR-TB | lineage2.2.2 | None | SRR29772565 | MDR-TB | lineage1.1.2 | None | ERR13243551 | MDR-TB | lineage2.2.2 | None | ERR6359054 | MDR-TB | lineage4.6.1.2 | None | ERR9125848 | HR-TB | lineage1.1.1.1 | None | ERR5865683 | Pre-XDR-TB | lineage2.2.1 | None | ERR9907714 | MDR-TB | lineage4.3.3 | None | ERR4799163 | Pre-XDR-TB | lineage4.2.2.2 | in | SRR1049625 | MDR-TB | lineage4.3.4.2.1 | None | SRR28393334 | MDR-TB | lineage4.1.2.1 | None | SRR28646099 | MDR-TB | lineage4.1.2.1 | None | SRR1049600 | MDR-TB | lineage4.6.1.2 | None | SAMN02403540 | MDR-TB | lineage3.1.1 | za | SRR28044509 | MDR-TB | lineage1.1.2 | None | SRR28393603 | MDR-TB | lineage4.8 | None | SRR6152933 | HR-TB | lineage1.2.1.2.1 | ca | ERR4828507 | Sensitive | lineage1.2.1.2.1 | None | ERR4813825 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6336796 | HR-TB | lineage1.2.1.2 | None | ERR040134 | MDR-TB | lineage4.3.4.2.1 | ug | SRR11662128 | MDR-TB | lineage2.2.1 | None | ERR987706 | MDR-TB | lineage4.3.4.2.1 | None | SRR7496486 | HR-TB | lineage1.1.1.1 | us | SRR7496485 | HR-TB | lineage1.1.1.1 | us | SRR25515401 | MDR-TB | lineage2.2.2 | None | SRR12199474 | Sensitive | lineage1.1.3.1 | None | SRR4423175 | Pre-XDR-TB | lineage4.8 | None | ERR6358743 | Pre-XDR-TB | lineage4.6.1.2 | None | SRR14164427 | Other | lineage1.1.2 | None | SRR25827846 | Pre-XDR-TB | lineage4.8 | None | SRR25515185 | MDR-TB | lineage2.2.2 | None | SRR11972442 | MDR-TB | lineage1.1.3 | None | SRR26159050 | MDR-TB | lineage4.9 | None | ERR13291472 | HR-TB | lineage4.8 | None | SRR29080993 | MDR-TB | lineage1.2.1.2.1 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR13243368 | MDR-TB | lineage2.2.2 | None | ERR4817940 | HR-TB | lineage1.2.1.2 | None | SRR22250190 | Sensitive | lineage4.1.2.1 | None | ERR13430438 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017120 | MDR-TB | lineage1.2.2.2 | None | ERR4423782 | MDR-TB | lineage4.6.2.2 | None | ERR10680194 | MDR-TB | lineage4.8 | None | SRR22175173 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR10040530 | MDR-TB | lineage4.5 | None | SRR29017676 | MDR-TB | lineage1.2.2.2;lineage4 | None | ERR13267063 | XDR-TB | lineage4.8 | None | SRR1062898 | MDR-TB | lineage4.3.4.2.1 | None | ERR2510604 | Pre-XDR-TB | lineage3 | pk | SRR1062888 | MDR-TB | lineage4.6.1.2 | None | ERR3335761 | Pre-XDR-TB | lineage3.1.3 | pk | ERR3335802 | MDR-TB | lineage3 | pk | SRR1049599 | MDR-TB | lineage4.6.1.2 | None | ERR6336801 | HR-TB | lineage1.2.1.2 | None | SRR29093908 | MDR-TB | lineage2.2.2 | None | SRR16057944 | HR-TB | lineage1.2.1.2 | None | ERR5866510 | MDR-TB | lineage4.3.3 | None | ERR4799172 | Pre-XDR-TB | lineage4.8 | in | ERR4799476 | HR-TB | lineage4.2.2.2 | in | ERR6359089 | MDR-TB | lineage4.6.1.2 | None | ERR4799930 | Pre-XDR-TB | lineage1.1.2 | in | SRR17658006 | HR-TB | lineage1.2.2.2 | None | ERR4800284 | Pre-XDR-TB | lineage3 | in | ERR5865684 | Pre-XDR-TB | lineage2.2.1 | None | SRR8651625 | MDR-TB | lineage4.4.2 | cn | SRR1166324 | Pre-XDR-TB | lineage4.1.2.1 | ro | ERR4811305 | RR-TB | lineage4.5 | cn | SRR28044510 | MDR-TB | lineage1.1.2 | None | ERR11775983 | MDR-TB | lineage1.2.1.2.1 | None | ERR4831051 | MDR-TB | lineage4.8 | np | SRR28044511 | MDR-TB | lineage1.1.2 | None | ERR038737 | MDR-TB | lineage4.3.4.2.1 | ug | SAMN02380998 | MDR-TB | lineage4.6.1.2 | ug | ERR133858 | MDR-TB | lineage4.2.1.1 | ru | SRR6339666 | HR-TB | lineage4.8 | au | ERR038745 | MDR-TB | lineage4.3.4.2.1 | ug | ERR4553713 | MDR-TB | lineage4.8 | None | SRR25206941 | RR-TB | lineage4.5 | None | ERR13260964 | Pre-XDR-TB | lineage3.1.2 | None | SRR29273700 | MDR-TB | lineage4.1.2.1 | None | ERR11043259 | MDR-TB | lineage4.1.2.1 | None | ERR11081374 | MDR-TB | lineage2.2.1 | None | SRR12420719 | MDR-TB | lineage2.2.1 | None | SRR11567785 | MDR-TB | lineage4.4.2 | None | SRR16058487 | HR-TB | lineage1.1.1.1 | None | SRR5073939 | HR-TB | lineage1.1.1.1 | vn | SRR11567784 | MDR-TB | lineage4.4.2 | None | SRR5074075 | HR-TB | lineage4.1.2.1 | vn | SRR17657980 | HR-TB | lineage1.2.2.2 | None | SRR7535045 | MDR-TB | lineage4.3.4.2.1 | None |
|---|
