Rv2043c - c.391dupG
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
3 RR-TB
3 HR-TB
89 MDR-TB
150 Pre-XDR-TB
11 XDR-TB
4 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4 | 1 |
| lineage2.2.1 | 114 |
| lineage4.1.2.1 | 4 |
| lineage4.3.4.1 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.8 | 26 |
| lineage2.2.1;lineage4.8 | 2 |
| lineage4.3.3 | 13 |
| lineage3 | 17 |
| lineage1.1.2 | 12 |
| lineage3.1.2 | 2 |
| lineage2.2.2 | 4 |
| lineage4.1.1.3 | 5 |
| lineage5.2 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.1.3.1 | 3 |
| lineage4.5 | 3 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.2.1 | 5 |
| lineage4.9 | 2 |
| lineage4.3.4.2 | 4 |
| lineage4.1.3 | 2 |
| lineage2.2.1.1 | 4 |
| lineage1.1.2;lineage2.2.1 | 2 |
| lineage1.1;lineage3.1.2 | 1 |
| lineage1.1.3.3 | 2 |
| lineage1.1 | 1 |
| lineage1.2.2.2 | 4 |
| lineage1.2.1.2.1 | 3 |
| 1 | |
| lineage4.6.2.2 | 2 |
| lineage1.1.3 | 2 |
| lineage1.1.1.1;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.7 | 1 |
| lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 260 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15315964 | Pre-XDR-TB | lineage4.4 | None | ERR13106397 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273973 | MDR-TB | lineage4.1.2.1 | None | SRR14802111 | MDR-TB | lineage2.2.1 | None | SRR25207304 | XDR-TB | lineage2.2.1 | None | ERR6866468 | MDR-TB | lineage4.3.4.1 | None | SRR29772496 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR6832144 | MDR-TB | lineage2.2.1 | None | SRR29274730 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290360 | Pre-XDR-TB | lineage4.8 | None | ERR2307650 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576585 | MDR-TB | lineage2.2.1 | None | SRR25827780 | XDR-TB | lineage2.2.1;lineage4.8 | None | SRR27107300 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR25389484 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231554 | MDR-TB | lineage4.3.3 | None | ERR13284867 | MDR-TB | lineage2.2.1 | None | ERR5897098 | Pre-XDR-TB | lineage3 | None | ERR2510429 | MDR-TB | lineage1.1.2 | pk | SRR29289223 | XDR-TB | lineage3 | None | ERR2510614 | Pre-XDR-TB | lineage3 | pk | ERR3335753 | RR-TB | lineage1.1.2 | pk | ERR4798283 | Pre-XDR-TB | lineage3.1.2 | in | ERR4798274 | Pre-XDR-TB | lineage2.2.1 | in | ERR13284686 | MDR-TB | lineage4.3.3 | None | ERR4799428 | MDR-TB | lineage3 | in | ERR4799519 | Pre-XDR-TB | lineage2.2.1 | in | SRR29017454 | Pre-XDR-TB | lineage4.8 | None | ERR4796613 | Pre-XDR-TB | lineage2.2.1 | in | ERR13261373 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043927 | MDR-TB | lineage2.2.1 | None | SRR671807 | Pre-XDR-TB | lineage2.2.1 | cn | ERR13191366 | MDR-TB | lineage2.2.2 | None | SRR28046348 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28923833 | MDR-TB | lineage2.2.2 | None | SRR28045921 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4830937 | Pre-XDR-TB | lineage2.2.1 | np | ERR7911321 | MDR-TB | lineage2.2.1 | vn | ERR2707015 | MDR-TB | lineage5.2 | cd | ERR2707156 | MDR-TB | lineage4.3.3 | cd | ERR2707153 | MDR-TB | lineage4.3.3 | cd | SRR25827430 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR2307364 | Pre-XDR-TB | lineage2.2.1 | None | ERR067612 | RR-TB | lineage4.3.3 | ru | SRR6824615 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6797474 | MDR-TB | lineage1.1.3.1 | None | ERR13258429 | Pre-XDR-TB | lineage2.2.1 | None | ERR5897093 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR5897117 | Pre-XDR-TB | lineage4.5 | None | SRR22424755 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290359 | Pre-XDR-TB | lineage4.8 | None | SRR26331614 | Pre-XDR-TB | lineage4.3.2.1 | None | ERR4830846 | Pre-XDR-TB | lineage1.1.2 | None | SRR28045448 | RR-TB | lineage2.2.1.2 | None | SRR16087918 | MDR-TB | lineage2.2.1 | None | SRR7585422 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR9119486 | MDR-TB | lineage4.8 | None | ERR4553888 | MDR-TB | lineage4.8 | None | SRR25389481 | Pre-XDR-TB | lineage2.2.1 | None | SRR3743435 | Pre-XDR-TB | lineage4.2.1 | None | ERR13266394 | Pre-XDR-TB | lineage2.2.1 | None | ERR13289375 | Pre-XDR-TB | lineage4.9 | None | SRR25827302 | MDR-TB | lineage4.8 | None | SRR10303330 | Pre-XDR-TB | lineage2.2.1 | None | SRR1144769 | Pre-XDR-TB | lineage4.8 | None | ERR3287358 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4822550 | MDR-TB | lineage2.2.1 | None | ERR562809 | MDR-TB | lineage2.2.1 | None | ERR4798997 | Pre-XDR-TB | lineage2.2.1 | None | SRR23310932 | XDR-TB | lineage4.2.1 | None | ERR5865728 | MDR-TB | lineage2.2.1 | None | SRR25207145 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681294 | XDR-TB | lineage2.2.1 | None | ERR11083131 | MDR-TB | lineage4.3.3 | None | SRR18714836 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043921 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231790 | MDR-TB | lineage4.3.3 | None | SRR26936956 | MDR-TB | lineage2.2.1 | None | SRR11662352 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207037 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539506 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153223 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266079 | Pre-XDR-TB | lineage2.2.1 | None | SRR28923834 | MDR-TB | lineage2.2.2 | None | ERR13266691 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284343 | MDR-TB | lineage4.1.3 | None | SRR15014714 | MDR-TB | lineage4.8 | None | ERR2307655 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045054 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29274175 | Pre-XDR-TB | lineage4.8 | None | SRR29231113 | Pre-XDR-TB | lineage3 | None | SRR11662562 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290878 | HR-TB | lineage1.1.2;lineage2.2.1 | None | SRR25827695 | MDR-TB | lineage1.1;lineage3.1.2 | None | ERR13290361 | Pre-XDR-TB | lineage4.8 | None | ERR5864795 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866103 | Pre-XDR-TB | lineage4.3.3 | None | ERR4796509 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797898 | XDR-TB | lineage2.2.1 | in | ERR4797975 | Pre-XDR-TB | lineage2.2.1 | in | ERR5865727 | MDR-TB | lineage2.2.1 | None | ERR4800221 | HR-TB | lineage1.1.2;lineage2.2.1 | in | ERR4796771 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800360 | Pre-XDR-TB | lineage2.2.1 | in | SRR29093317 | Pre-XDR-TB | lineage4.9 | None | SAMN02414886 | Pre-XDR-TB | lineage4.8 | se | ERR13261169 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR4813855 | Pre-XDR-TB | lineage4.3.3 | br | SRR28045652 | MDR-TB | lineage1.1.3.3 | None | SRR28706472 | MDR-TB | lineage2.2.1 | None | ERR7911276 | MDR-TB | lineage2.2.1 | vn | ERR8665527 | Pre-XDR-TB | lineage4.3.3 | None | SRR2024988 | Pre-XDR-TB | lineage2.2.1 | cn | DRR130114 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516665 | Pre-XDR-TB | lineage2.2.1 | pe | SRR5709792 | Pre-XDR-TB | lineage1.1 | th | SRR10430383 | Pre-XDR-TB | lineage2.2.1 | None | SRR25340788 | MDR-TB | lineage1.2.2.2 | None | ERR13266517 | XDR-TB | lineage2.2.1 | None | ERR11551990 | MDR-TB | lineage4.1.2.1 | None | ERR5865861 | Pre-XDR-TB | lineage2.2.1 | None | SRR25340938 | MDR-TB | lineage1.1.2 | None | ERR4799178 | MDR-TB | lineage4.8 | in | ERR4799302 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799472 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799436 | Pre-XDR-TB | lineage2.2.1 | in | SRR1162958 | Pre-XDR-TB | lineage4.8 | None | SRR9224963 | MDR-TB | lineage4.3.4.2 | None | ERR11043466 | MDR-TB | lineage4.8 | None | ERR13260072 | MDR-TB | lineage1.2.1.2.1 | None | SRR25827453 | MDR-TB | None | ERR9125281 | MDR-TB | lineage1.2.1.2.1 | None | SRR8380948 | MDR-TB | lineage4.8 | in | SRR18714978 | MDR-TB | lineage4.6.2.2 | None | SRR6832593 | MDR-TB | lineage4.1.2.1 | None | SRR20969664 | XDR-TB | lineage2.2.1 | None | ERR4553897 | Pre-XDR-TB | lineage4.8 | None | SRR24256223 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175213 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261387 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389483 | Pre-XDR-TB | lineage2.2.1 | None | SRR10305964 | MDR-TB | lineage2.2.1 | None | SRR25827298 | XDR-TB | lineage2.2.1 | None | SRR26056436 | MDR-TB | lineage1.1.3.1 | None | ERR4553760 | MDR-TB | lineage1.1.3 | None | ERR13266696 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865936 | MDR-TB | lineage2.2.1 | None | SRR29772465 | Pre-XDR-TB | lineage1.1.2 | None | ERR5864796 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207386 | MDR-TB | lineage2.2.1 | None | SRR25206892 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11043475 | MDR-TB | lineage4.1.3 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR8665725 | Pre-XDR-TB | lineage4.3.3 | None | SRR29050913 | MDR-TB | lineage4.3.4.2 | None | ERR13290358 | Pre-XDR-TB | lineage4.8 | None | ERR13266659 | Pre-XDR-TB | lineage2.2.1 | None | ERR5897072 | Pre-XDR-TB | lineage3 | None | SRR11662693 | Pre-XDR-TB | lineage1.1.1.1;lineage2.2.1 | None | SRR25827503 | Pre-XDR-TB | lineage2.2.1 | None | SRR29016827 | MDR-TB | lineage4.8 | None | SRR29772400 | MDR-TB | lineage1.1.2 | None | SRR29273635 | MDR-TB | lineage4.1.2.1 | None | SRR25207043 | MDR-TB | lineage2.2.1 | None | SRR29127005 | Other | lineage1.1.2 | None | ERR13261309 | Pre-XDR-TB | lineage4.8 | None | SRR29231833 | MDR-TB | lineage5.2 | None | ERR13262066 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865862 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017704 | MDR-TB | lineage1.1.3 | None | SRR29126291 | Other | lineage1.1.2 | None | SRR16058383 | MDR-TB | lineage1.2.1.2.1 | None | ERR16022294 | MDR-TB | lineage1.1.3.3 | None | SRR3105757 | Pre-XDR-TB | lineage3 | None | SRR16088069 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR1035326 | Pre-XDR-TB | lineage4.7 | br | ERR2510604 | Pre-XDR-TB | lineage3 | pk | ERR2510600 | Pre-XDR-TB | lineage3 | pk | SRR3105758 | MDR-TB | lineage3 | None | SRR14088352 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR15686468 | Pre-XDR-TB | lineage4.5 | None | ERR3148215 | Pre-XDR-TB | lineage4.1.1.3 | mx | ERR5864797 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799787 | MDR-TB | lineage3 | None | ERR4798194 | MDR-TB | lineage1.2.2.2 | in | ERR4796832 | Pre-XDR-TB | lineage3.1.2 | in | ERR4797821 | Pre-XDR-TB | lineage3 | in | SRR29772809 | MDR-TB | lineage1.1.2 | None | ERR5897100 | Pre-XDR-TB | lineage3 | None | ERR4799172 | Pre-XDR-TB | lineage4.8 | in | ERR4799443 | Pre-XDR-TB | lineage1.1.2 | in | ERR4800497 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797859 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798816 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | in | SRR29681230 | MDR-TB | lineage2.2.1 | None | ERR4797401 | Pre-XDR-TB | lineage3 | in | ERR4797399 | Pre-XDR-TB | lineage2.2.1 | in | SRR29274734 | Pre-XDR-TB | lineage2.2.1 | None | SRR6797552 | Other | lineage1.1.3.1 | None | SRR29274743 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831710 | MDR-TB | lineage2.2.1 | None | SRR16087929 | Pre-XDR-TB | lineage4.3.3 | None | SRR13243561 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864798 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539706 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810924 | MDR-TB | lineage2.2.1 | cn | SRR3105742 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR11465549 | MDR-TB | lineage4.1.1.3 | None | SRR28706493 | MDR-TB | lineage2.2.1 | None | SRR28351277 | MDR-TB | lineage4.8 | None | ERR4809304 | XDR-TB | lineage4.3.2.1 | za | ERR5897116 | Pre-XDR-TB | lineage4.5 | None | ERR10748289 | MDR-TB | lineage2.2.1.1 | None | ERR983230 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR22424822 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045565 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044958 | Pre-XDR-TB | lineage3 | None | SRR21277272 | MDR-TB | lineage2.2.2 | None | SRR7585411 | MDR-TB | lineage3 | in | SRR5709916 | MDR-TB | lineage1.1.1 | th | SRR1146347 | Pre-XDR-TB | lineage4.8 | None | SRR14782609 | Pre-XDR-TB | lineage4.2.1 | None | SRR14782638 | HR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR5864794 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969572 | XDR-TB | lineage2.2.1 | None | ERR5864799 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864801 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274774 | Pre-XDR-TB | lineage2.2.1 | None | SRR29051544 | MDR-TB | lineage4.3.4.2 | None | ERR13292575 | Pre-XDR-TB | lineage4.2.1 | None | SRR11033729 | MDR-TB | lineage2.2.1 | None | SRR5818635 | MDR-TB | lineage1.1.2 | dj | SRR23861895 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465548 | MDR-TB | lineage4.1.1.3 | None | SRR3544724 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872080 | MDR-TB | lineage4.8 | None | ERR4827921 | MDR-TB | lineage2.2.1 | None | SRR22249657 | Other | lineage2.2.1 | None | ERR4829130 | Pre-XDR-TB | lineage1.2.2.2 | pk | SRR26937041 | MDR-TB | lineage2.2.1 | None | ERR4829971 | Pre-XDR-TB | lineage3 | pk | ERR4829940 | Pre-XDR-TB | lineage3;lineage4 | pk | ERR5864802 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389482 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864800 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865945 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665724 | Pre-XDR-TB | lineage4.3.3 | None | SRR29273761 | Pre-XDR-TB | lineage4.8 | None | SRR1723838 | Pre-XDR-TB | lineage2.2.1 | cn | SRR29274751 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267486 | MDR-TB | lineage1.1.2 | None | ERR13261383 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307715 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380170 | MDR-TB | lineage2.2.1 | None | SRR25827401 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798668 | Pre-XDR-TB | lineage4.2.1 | None | ERR11081103 | MDR-TB | lineage2.2.1 | None | SRR5535825 | MDR-TB | lineage4.6.2.2 | None | ERR13266119 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163046 | Pre-XDR-TB | lineage4.8 | None |
|---|
