Rv0529 - c.870C>G
Drug resistance types
30 Sensitive
5 RR-TB
2 HR-TB
15 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
4 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 29 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage4.1.2.1 | 2 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 57 |
Geographic prevalence
Country level data for this variant is available for 28 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR4033724 | Sensitive | lineage2.2.1 | za | SRR4033737 | Sensitive | lineage2.2.1 | za | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR4033758 | Sensitive | lineage2.2.1 | za | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR4033746 | Sensitive | lineage2.2.1 | za | SRR4033740 | Sensitive | lineage2.2.1 | za | SRR4033727 | Sensitive | lineage2.2.1 | za | SRR15014655 | Other | M.canetti;lineage1 | None | SRR4033739 | Sensitive | lineage2.2.1 | za | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR11050812 | Sensitive | lineage4.1.2.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR4033749 | Sensitive | lineage2.2.1 | za | SRR4033717 | Sensitive | lineage2.2.1 | za | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR7070441 | Sensitive | lineage2.2.1 | None | SRR4033725 | Sensitive | lineage2.2.1 | za | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR4033741 | Sensitive | lineage2.2.1 | za | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR4033753 | Sensitive | lineage2.2.1 | za | SRR3675586 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | SRR4033751 | Sensitive | lineage2.2.1 | za | SRR4033728 | Sensitive | lineage2.2.1 | za | ERR551546 | Sensitive | lineage4.1.2.1 | de | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR4033742 | Sensitive | lineage2.2.1 | za | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR4033731 | Sensitive | lineage2.2.1 | za | SRR4033743 | Sensitive | lineage2.2.1 | za | ERR2513434 | Sensitive | lineage2.2.1 | gb | SRR4033747 | Sensitive | lineage2.2.1 | za | SRR4033729 | Sensitive | lineage2.2.1 | za | SRR4033748 | Sensitive | lineage2.2.1 | za | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR4033735 | Sensitive | lineage2.2.1 | za | SRR4033732 | Sensitive | lineage2.2.1 | za | SRR6046382 | RR-TB | lineage2.2.1 | None | SRR4033752 | Sensitive | lineage2.2.1 | za | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR4033730 | Sensitive | lineage2.2.1 | za | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR4033723 | Sensitive | lineage2.2.1 | za | SRR4033736 | Sensitive | lineage2.2.1 | za |
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