Rv3596c - c.405C>T


Drug resistance types
35 Sensitive 1 RR-TB 16 HR-TB 12 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 32 Other
lineage Counts
lineage Count
lineage4.9 43
La3;lineage2.1;lineage4.9;lineage6.3 1
2
lineage1.1.1;lineage4 1
La1.7;lineage4.9 2
lineage4.5 2
La1;lineage4.9 1
lineage2.2.1 4
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.1.1.3;lineage4.9 2
lineage4.2;lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La1.7;lineage4.9;lineage7 3
La1.2;La1.8.1 1
lineage4.3.3 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
M.canetti;lineage4.9 1
lineage4.3.4.2 2
lineage5.1.4 1
lineage4.9;lineage7 1
lineage1;lineage4.9 1
lineage4.9;lineage6.1.3 1
La3;lineage4.9 2
lineage2.2 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La1.7.X-unk4;lineage4.9 1
La2;lineage2.2 1
lineage4.3.1;lineage4.9;lineage6 1
lineage2.1;lineage4.9 1
La3;lineage4.3.4 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.1.2.1 1
La1.6;lineage4 1
lineage4.2.1.1;lineage4.3.3 1
La1.6;La3;M.canetti;lineage4.2.2 1
La2;lineage4.9 1
lineage1.1.1.1 1
lineage4.3.4.2.1 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 97
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR373947 Other lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR12708416 Sensitive None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR363456 Sensitive lineage4.9 None
ERR4815878 Sensitive lineage4.5 None
ERR4769497 Other La1;lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR6866807 Other lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR9119669 HR-TB lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR736856 Sensitive lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR7240033 Other La1.2;La1.8.1 None
ERR161037 Other lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
SRR6480529 Sensitive lineage4.3.3 None
SRR8217918 HR-TB lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR3675247 Other lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
ERR473332 Other lineage4.9 None
ERR9786346 Sensitive lineage4.3.4.2 None
ERR2513283 Sensitive lineage5.1.4 None
SRR5341456 Other lineage4.9 None
ERR369159 Sensitive lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR4796577 HR-TB None
ERR181744 HR-TB La3;lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
ERR4810624 MDR-TB lineage2.2 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR9786592 Other lineage4.3.4.2 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR363506 Sensitive lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR14801759 HR-TB La1.7;lineage4.9 None
SRR6046492 Other lineage4.9 None
ERR373945 Sensitive lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR11662694 Other lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR400326 Other lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR1063862 HR-TB lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR6046564 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR9786656 Sensitive lineage4.1.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR181824 HR-TB lineage4.9 None
SRR28119827 Other La3;lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
SRR28351554 Sensitive La1.6;lineage4 None
ERR4811030 Sensitive lineage4.9 None
ERR363453 Sensitive lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR400320 Sensitive lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR3675522 Other lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR6358979 Other lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR26399491 Sensitive lineage1.1.1.1 None
ERR400345 Other lineage4.9 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
ERR363449 Sensitive lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6045371 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None