Rv3596c - c.405C>T
Drug resistance types
35 Sensitive
1 RR-TB
16 HR-TB
12 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 43 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 2 | |
| lineage1.1.1;lineage4 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.5 | 2 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.2;La1.8.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.3.4.2 | 2 |
| lineage5.1.4 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La3;lineage4.3.4 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.1.2.1 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La2;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 97 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12708416 | Sensitive | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR4815878 | Sensitive | lineage4.5 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR6866807 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR161037 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR6480529 | Sensitive | lineage4.3.3 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR5341456 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4796577 | HR-TB | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9786592 | Other | lineage4.3.4.2 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675522 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR6358979 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | ERR400345 | Other | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6045371 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None |
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