lineage | Count |
---|---|
lineage4 | 18 |
88 | |
lineage2.2 | 3 |
lineage2 | 3 |
La1 | 1 |
lineage3 | 1 |
lineage4.3.4 | 1 |
lineage4.9 | 11 |
La3 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.3 | 3 |
lineage2.2.1 | 6 |
lineage3.1 | 2 |
lineage4.5 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.9;La3 | 1 |
lineage4.1.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.3 | 1 |
lineage4.8 | 1 |
La1.8.1 | 1 |
lineage4.1.2.1 | 1 |
lineage4;lineage3.1 | 1 |
spoligotype | Count |
---|---|
None | 149 |
ID | Drug resistance | Lineage | Country iso2 | ERR4769474 | HR-TB | lineage4 | None | ERR4407463 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798262 | HR-TB | La1 | None | ERR4800341 | Other | lineage3 | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR5336148 | Other | None | ERR702406 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736867 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | SRR1167384 | Other | lineage4 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9787197 | Other | None | ERR736875 | HR-TB | lineage4 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172234 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1175049 | RR-TB | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1175074 | MDR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184380 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR19304036 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR14801749 | Sensitive | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR3675465 | HR-TB | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR4816999 | Other | None | ERR176751 | HR-TB | None | SRR3675311 | Other | None | ERR212033 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR212034 | HR-TB | None | ERR212121 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818615 | Other | None | ERR234659 | HR-TB | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | ERR1035138 | MDR-TB | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341432 | HR-TB | lineage4 | None | SRR6045503 | HR-TB | None | SRR5341330 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR323037 | HR-TB | lineage4 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502532 | HR-TB | None | ERR294266 | HR-TB | None | ERR1063858 | HR-TB | None | ERR323045 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR323043 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283027 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1213932 | Sensitive | lineage4.1.2.1 | None | ERR133825 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR405209 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797071 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None |
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