Rv0005 - c.-162_-161insG
Drug resistance types
169 Sensitive
7 RR-TB
15 HR-TB
54 MDR-TB
59 Pre-XDR-TB
2 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 15 |
| lineage4.3.2 | 4 |
| lineage1.1.2 | 4 |
| lineage1.2.2.2 | 4 |
| lineage2.2.1 | 56 |
| lineage4.5 | 11 |
| lineage1.1.3.2 | 73 |
| lineage2.2.2 | 7 |
| lineage4.7 | 4 |
| lineage4.3.3 | 4 |
| lineage4.4.1.1 | 6 |
| lineage4.6.5 | 1 |
| lineage3.1.2.1;lineage2.2.1 | 1 |
| lineage3;lineage2.2.1.1 | 1 |
| lineage4.2.2 | 2 |
| lineage1.2.1.2.1 | 2 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2.1 | 9 |
| lineage4.8 | 32 |
| lineage1.1.3 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.9 | 6 |
| lineage4.6.1.1 | 2 |
| lineage4.4.2 | 2 |
| lineage4.4 | 1 |
| lineage3;lineage2.2.1 | 3 |
| lineage3.1.2;lineage2.2.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage2.1 | 8 |
| lineage4;lineage1.1.3.2 | 1 |
| lineage4 | 4 |
| lineage1.1.1.1 | 2 |
| lineage4.2.1.1 | 2 |
| lineage6.2.2 | 2 |
| lineage1.1.3.2;lineage1.1.2 | 1 |
| lineage4.1.1.3 | 12 |
| lineage4.6.1.2 | 3 |
| lineage4.3.4.2.1 | 4 |
| lineage1.2.2.1 | 3 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage3.1.2 | 1 |
| lineage4.2.1 | 3 |
| lineage4.4.1.2 | 2 |
| lineage4.9;lineage3 | 1 |
| La1.8.2 | 1 |
| lineage3.1.1 | 2 |
| lineage4.6 | 2 |
| lineage6 | 3 |
| lineage3.1 | 1 |
| La1.8.1 | 1 |
| lineage4.3.4.2;lineage1.1.3.2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1 | 1 |
| lineage2.2 | 1 |
| 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 327 |
Geographic prevalence
Country level data for this variant is available for 98 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14088349 | Pre-XDR-TB | lineage3 | None | SRR14088377 | Pre-XDR-TB | lineage3 | None | SRR14088386 | Pre-XDR-TB | lineage3 | None | SRR14164411 | Sensitive | lineage4.3.2 | None | SRR15014674 | MDR-TB | lineage1.1.2 | None | SRR14164856 | Sensitive | lineage4.3.2 | None | SRR14514371 | Sensitive | lineage1.2.2.2 | None | SRR16156724 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315920 | Sensitive | lineage4.5 | None | SRR15364444 | Pre-XDR-TB | lineage2.2.1 | None | SRR16115876 | Sensitive | lineage1.1.3.2 | None | SRR15723011 | Pre-XDR-TB | lineage2.2.2 | None | SRR16057925 | Sensitive | lineage4.7 | None | SRR16101285 | Sensitive | lineage3 | None | SRR18002905 | Other | lineage2.2.1 | None | SRR18911595 | Sensitive | lineage4.3.3 | None | SRR18914182 | HR-TB | lineage2.2.1 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19304058 | Other | lineage4.6.5 | None | SRR18913789 | Sensitive | lineage1.1.3.2 | None | ERR11488821 | MDR-TB | lineage1.1.3.2 | None | SRR25827788 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827666 | MDR-TB | lineage3.1.2.1;lineage2.2.1 | None | SRR25827389 | Pre-XDR-TB | lineage3;lineage2.2.1.1 | None | ERR11082859 | Sensitive | lineage4.2.2 | None | SRR21277484 | Sensitive | lineage1.2.1.2.1 | None | SRR21279411 | Sensitive | lineage2.2.1.1 | None | SRR21676425 | Sensitive | lineage4.1.2.1 | None | ERR11082702 | MDR-TB | lineage4.8 | None | SRR25827388 | Pre-XDR-TB | lineage2.2.1 | None | SRR21658773 | Sensitive | lineage1.1.3 | None | SRR22424942 | Pre-XDR-TB | lineage2.2.1 | None | ERR12544133 | Sensitive | lineage4.3.4.1 | None | ERR8025448 | Pre-XDR-TB | lineage2.2.2 | None | SRR6207288 | HR-TB | lineage1.1.3.2 | None | SRR26399509 | HR-TB | lineage2.2.1 | None | SRR23861763 | Sensitive | lineage4.8 | None | SRR23862108 | Sensitive | lineage4.8 | None | ERR9806803 | RR-TB | lineage1.1.3.2 | None | ERR10610128 | RR-TB | lineage1.1.3.2 | None | ERR6929523 | RR-TB | lineage1.1.3.2 | None | ERR10112852 | Pre-XDR-TB | lineage2.2.2 | None | SRR6797483 | Sensitive | lineage4.9 | None | SRR6797776 | Sensitive | lineage4.9 | None | SRR27450295 | Sensitive | lineage4.6.1.1 | None | SRR26112365 | Sensitive | lineage2.2.1 | None | SRR25515231 | Sensitive | lineage4.4.2 | None | SRR25206880 | Pre-XDR-TB | lineage2.2.1 | None | SRR24673573 | Sensitive | lineage4.7 | None | SRR25515277 | Sensitive | lineage4.4.2 | None | SRR25515709 | Sensitive | lineage4.4 | None | SRR25515673 | Sensitive | lineage2.2.2 | None | SRR25827326 | MDR-TB | lineage3;lineage2.2.1 | None | SRR25534152 | Sensitive | lineage2.2.1 | None | SRR25827407 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR28239849 | Sensitive | lineage2.2.1 | None | SRR25827364 | XDR-TB | lineage3.1.2;lineage2.2.1 | None | SRR25827585 | MDR-TB | lineage2.2.1 | None | SRR25827778 | MDR-TB | lineage2.2.1 | None | SRR25827626 | MDR-TB | lineage2.2.1 | None | ERR4815189 | Sensitive | lineage1.1.3.2 | None | SRR25827665 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR176781 | Sensitive | lineage1.1.3.2 | None | SRR6280242 | Other | lineage2.2.1 | cn | SRR6280328 | Other | lineage2.2.1 | cn | SRR6280222 | Other | lineage2.2.1 | cn | SRR6280165 | Other | lineage2.2.1 | cn | ERR245748 | Sensitive | lineage1.1.3.2 | mw | ERR245782 | Sensitive | lineage1.1.3.2 | mw | ERR245648 | Sensitive | lineage1.1.3.2 | mw | ERR037520 | Sensitive | lineage1.1.3.2 | mw | SRR671875 | Sensitive | lineage2.2.1 | cn | ERR1034607 | MDR-TB | lineage1.1.2 | pk | ERR4815666 | Sensitive | lineage4.8 | None | ERR037536 | Sensitive | lineage1.1.3.2 | mw | ERR124640 | Sensitive | lineage1.1.3.2 | mw | ERR1034577 | Sensitive | lineage3 | pk | ERR2200009 | Sensitive | lineage1.1.3.2 | sz | SRR3391833 | HR-TB | lineage4.8 | None | ERR2199787 | Sensitive | lineage1.1.3.2 | sz | ERR2199973 | Sensitive | lineage4.9 | sz | ERR2199998 | Sensitive | lineage4.3.2.1 | sz | SRR5709897 | Pre-XDR-TB | lineage2.1 | th | ERR4815721 | Sensitive | lineage1.1.3.2 | None | SRR5710021 | Pre-XDR-TB | lineage2.1 | th | SRR5709898 | Pre-XDR-TB | lineage2.1 | th | SRR5709883 | Pre-XDR-TB | lineage2.1 | th | ERR212079 | Sensitive | lineage1.1.3.2 | mw | SRR6325452 | Sensitive | lineage4.1.2.1 | us | ERR212073 | Sensitive | lineage1.1.3.2 | mw | ERR4814924 | Sensitive | lineage1.1.3.2 | None | ERR216952 | Sensitive | lineage1.1.3.2 | None | ERR212161 | Sensitive | lineage4;lineage1.1.3.2 | mw | ERR216940 | Sensitive | lineage1.1.3.2 | mw | ERR161088 | Sensitive | lineage1.1.3.2 | mw | ERR161181 | Sensitive | lineage1.1.3.2 | mw | ERR4816869 | Other | lineage4.3.3 | None | ERR176770 | Sensitive | lineage1.1.3.2 | mw | ERR181752 | Sensitive | lineage1.1.3.2 | mw | ERR182009 | Sensitive | lineage1.1.3.2 | mw | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | ERR133845 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2179816 | Sensitive | lineage4 | None | ERR190382 | Sensitive | lineage1.1.3.2 | mw | ERR163994 | Sensitive | lineage1.1.3.2 | mw | ERR4817735 | Other | lineage4.8 | None | SRR5065266 | Sensitive | lineage1.1.1.1 | vn | SRR6397375 | Sensitive | lineage4.2.1.1 | ca | ERR245820 | Sensitive | lineage1.1.3.2 | None | ERR4820257 | Sensitive | lineage4.5 | None | SRR6397680 | Sensitive | lineage4.2.1.1 | ca | ERR552267 | Sensitive | lineage6.2.2 | None | SAMN02381014 | Sensitive | lineage4.8 | ug | SAMN02381033 | Sensitive | lineage4.8 | ug | SRR5067601 | Other | lineage2.2.1 | vn | ERR161087 | Sensitive | lineage1.1.3.2;lineage1.1.2 | mw | ERR752071 | Sensitive | lineage1.2.1.2.1 | th | SAMEA2535315 | Sensitive | lineage1.1.3.2 | None | ERR400462 | Sensitive | lineage4.8 | gb | ERR400364 | Sensitive | lineage4.8 | gb | ERR550983 | Sensitive | lineage6.2.2 | de | ERR2516061 | Sensitive | lineage4.1.1.3 | None | ERR1199096 | MDR-TB | lineage4.6.1.2 | cd | ERR2707178 | MDR-TB | lineage4.3.4.2.1 | cd | ERR2707123 | MDR-TB | lineage4.6.1.2 | cd | ERR2660443 | HR-TB | lineage4.8 | None | SRR5535821 | Sensitive | lineage1.1.3.2 | None | ERR1199070 | Sensitive | lineage4.6.1.1 | ug | ERR2660434 | Sensitive | lineage1.1.3.2 | None | ERR2660446 | Sensitive | lineage1.1.3.2 | None | ERR2660468 | Sensitive | lineage1.1.3.2 | None | ERR2660447 | Sensitive | lineage1.1.3.2 | None | ERR2660449 | Sensitive | lineage1.1.3.2 | None | ERR2660508 | Sensitive | lineage1.1.3.2 | None | ERR2660490 | Sensitive | lineage4.3.2.1 | None | ERR2660476 | Sensitive | lineage1.1.3.2 | None | ERR2660519 | Sensitive | lineage1.2.2.1 | None | ERR4827612 | Sensitive | lineage2.2.1 | None | ERR2660524 | HR-TB | lineage1.1.3.2 | None | ERR2660540 | Sensitive | lineage1.1.3.2 | None | ERR4827485 | MDR-TB | lineage2.2.1 | None | ERR4831073 | Sensitive | lineage3.1.2.1 | np | ERR2517004 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2843453 | Sensitive | lineage1.1.1.1 | None | ERR4831283 | Sensitive | lineage4.8 | de | ERR2516627 | MDR-TB | lineage3 | nl | ERR4796331 | HR-TB | lineage4.9 | in | ERR4828322 | HR-TB | lineage2.2.1 | None | ERR4799809 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4798283 | Pre-XDR-TB | lineage3.1.2 | in | ERR4799558 | Pre-XDR-TB | lineage2.2.1 | in | ERR4828090 | MDR-TB | lineage4.2.1 | None | ERR4798194 | MDR-TB | lineage1.2.2.2 | in | ERR4798219 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4798245 | Sensitive | lineage1.1.2 | in | ERR4810881 | Sensitive | lineage4.5 | cn | SRR8651557 | Pre-XDR-TB | lineage4.5 | cn | SRR6485020 | MDR-TB | lineage4.8 | None | ERR4798655 | Pre-XDR-TB | lineage2.2.1 | in | SRR6650209 | Other | lineage4.8 | None | ERR4810733 | Other | lineage4.5 | cn | ERR4799176 | MDR-TB | lineage3 | in | ERR4810754 | Sensitive | lineage4.5 | cn | SRR6397551 | Other | lineage4.1.1.3 | None | ERR2510367 | Sensitive | lineage3 | pk | SRR6256970 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811612 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4797457 | XDR-TB | lineage4.8 | in | ERR2510764 | Pre-XDR-TB | lineage4.8 | it | ERR4817321 | Sensitive | lineage4.5 | gb | ERR4799952 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800038 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799737 | Sensitive | lineage4.4.1.2 | in | ERR4800090 | Pre-XDR-TB | lineage4.2.2 | in | ERR4800400 | Sensitive | lineage3 | in | SRR6832128 | Sensitive | lineage4.8 | None | ERR4972499 | MDR-TB | lineage4.4.1.1 | None | SRR6807713 | Pre-XDR-TB | lineage4.2.1 | None | SRR6832291 | Sensitive | lineage4.3.3 | None | SRR6797297 | Sensitive | lineage2.2.1 | None | SRR6797823 | Sensitive | lineage2.2.1 | None | SRR6797775 | Sensitive | lineage4.9 | None | ERR11465789 | Sensitive | lineage1.1.3.2 | None | DRR473785 | Sensitive | lineage4.9 | None | SRR6964676 | MDR-TB | lineage4.9;lineage3 | None | ERR4829166 | Sensitive | lineage4.1.1.3 | ng | SRR6855956 | Sensitive | lineage4.1.1.3 | None | ERR11465868 | Sensitive | lineage4.3.4.2.1 | None | ERR4812686 | Other | lineage4.3.2 | pe | ERR4813275 | Sensitive | lineage4.1.2.1 | pe | ERR4829127 | Pre-XDR-TB | lineage3 | pk | SRR7131109 | Pre-XDR-TB | lineage4.8 | None | ERR4829955 | MDR-TB | lineage3 | pk | ERR11067514 | Other | La1.8.2 | None | SRR7535080 | HR-TB | lineage4.8 | None | ERR11488476 | MDR-TB | lineage1.1.3.2 | None | ERR11465866 | Sensitive | lineage1.1.3.2 | None | DRR188637 | Sensitive | lineage2.2.1 | None | ERR4818093 | Sensitive | lineage3.1.1 | gb | ERR11488742 | MDR-TB | lineage1.2.2.1 | None | SRR7592387 | Pre-XDR-TB | lineage4.8 | None | SRR7653603 | Pre-XDR-TB | lineage2.2.1 | None | DRR034374 | Sensitive | lineage4.3.3 | None | ERR11488587 | RR-TB | lineage1.1.3.2 | None | ERR11488910 | MDR-TB | lineage1.1.3.2 | None | ERR11488475 | MDR-TB | lineage1.1.3.2 | None | ERR11489065 | MDR-TB | lineage1.1.3.2 | None | ERR4820206 | Sensitive | lineage1.1.3.2 | gb | ERR10465957 | Sensitive | lineage4.7 | None | ERR11466364 | Sensitive | lineage4.3.4.2.1 | None | ERR11466400 | Sensitive | lineage1.1.3.2 | None | ERR11465270 | Sensitive | lineage1.1.3.2 | None | ERR10969195 | Sensitive | lineage1.1.3.2 | None | ERR1063840 | Sensitive | lineage1.1.3.2 | None | ERR10680227 | MDR-TB | lineage4.8 | None | ERR10748168 | Sensitive | lineage1.1.3.2 | None | ERR10680225 | MDR-TB | lineage4.8 | None | ERR10762401 | MDR-TB | lineage4.2.1 | None | ERR10969101 | Sensitive | lineage4.3.4.1 | None | ERR2512836 | Sensitive | lineage2.2.1 | gb | ERR11044199 | MDR-TB | lineage3 | None | ERR4820687 | Sensitive | lineage1.1.3.2 | gb | ERR2512844 | Sensitive | lineage4.1.1.3 | gb | ERR2513232 | HR-TB | lineage4.6 | gb | ERR11488713 | MDR-TB | lineage1.2.2.1 | None | ERR11488721 | MDR-TB | lineage2.2.1 | None | ERR11488404 | RR-TB | lineage2.2.1 | None | ERR3273131 | MDR-TB | lineage4.5 | None | ERR4822060 | Sensitive | lineage4.5 | gb | ERR4011059 | Pre-XDR-TB | lineage2.2.1 | None | ERR3794507 | Pre-XDR-TB | lineage2.2.1 | None | ERR3806632 | Other | lineage6 | None | ERR2514357 | Sensitive | lineage2.2.1 | gb | ERR4011975 | MDR-TB | lineage4.1.1.3 | None | ERR4423551 | MDR-TB | lineage4.1.1.3 | None | ERR4195669 | Sensitive | lineage4.1.2.1 | None | ERR4553611 | MDR-TB | lineage3.1 | None | ERR4423552 | MDR-TB | lineage4.1.1.3 | None | ERR473349 | Sensitive | lineage1.1.3.2 | None | ERR4553806 | MDR-TB | lineage4.8 | None | ERR4627372 | Other | La1.8.1 | None | ERR473318 | Sensitive | lineage4.3.4.2;lineage1.1.3.2 | None | ERR2514952 | Sensitive | lineage1.2.2.2 | gb | ERR2513520 | Sensitive | lineage4.4.1.2 | gb | ERR2514763 | Sensitive | lineage4.5 | gb | ERR11489026 | MDR-TB | lineage1.1.3.2 | None | ERR2512713 | Sensitive | lineage4.3.4.2.1 | gb | ERR8975015 | Sensitive | lineage1.1.3.2 | None | ERR2515369 | RR-TB | lineage2.2.1 | za | ERR8975433 | Sensitive | lineage1.1.3.2 | None | ERR8665934 | Pre-XDR-TB | lineage2.2.1 | None | SRR11828979 | Pre-XDR-TB | lineage2.1 | th | ERR11049544 | Sensitive | lineage4.1.2 | None | ERR4831452 | Sensitive | lineage3 | None | SRR11828977 | Pre-XDR-TB | lineage2.1 | th | SRR11828978 | Pre-XDR-TB | lineage2.1 | th | ERR11049573 | Sensitive | lineage4.1.2 | None | ERR8665935 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800584 | Other | lineage4.6 | None | ERR4828532 | Other | lineage2.2.1.1 | vn | ERR8665990 | MDR-TB | lineage2.2.1 | None | ERR5864534 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864533 | Pre-XDR-TB | lineage2.2.1 | None | ERR5908201 | Sensitive | lineage4.1.2.1 | None | ERR5908200 | Sensitive | lineage4.1.2.1 | None | ERR6052059 | MDR-TB | lineage4.1.1.3 | None | ERR5987202 | MDR-TB | lineage2.2.2 | None | ERR6052027 | MDR-TB | lineage4.1.1.3 | None | ERR6358956 | MDR-TB | lineage4.6.1.2 | None | ERR688039 | MDR-TB | lineage1.1.2 | None | ERR688009 | Sensitive | lineage3 | None | SRR26937110 | MDR-TB | lineage2.2.1 | None | SRR21732354 | Sensitive | lineage4 | None | ERR751340 | Sensitive | lineage4.1 | None | ERR736866 | Sensitive | lineage1.1.3.2 | None | ERR7821102 | Sensitive | lineage4.4.1.1 | None | ERR779656 | Sensitive | lineage1.1.3.2 | None | ERR7821103 | HR-TB | lineage1.1.3.2 | None | ERR7821097 | HR-TB | lineage4.8 | None | ERR7821158 | Sensitive | lineage1.1.3.2 | None | ERR7821151 | HR-TB | lineage1.1.3.2 | None | ERR7821186 | Sensitive | lineage1.1.3.2 | None | ERR7821178 | Sensitive | lineage1.1.3.2 | None | SRR21733376 | Sensitive | lineage4.5 | None | ERR7821231 | HR-TB | lineage1.1.3.2 | None | ERR7902615 | Sensitive | lineage1.1.3.2 | None | SRR22249487 | Sensitive | lineage4.1.2.1 | None | ERR9030528 | RR-TB | lineage4.8 | None | ERR8774142 | MDR-TB | lineage4.1.1.3 | None | ERR8774144 | MDR-TB | lineage4.1.1.3 | None | ERR9119050 | Sensitive | lineage4.1.2.1 | None | ERR9786930 | Sensitive | lineage4.8 | None | ERR9125842 | Sensitive | lineage4.7 | None | ERR9119051 | Sensitive | lineage4.1.2.1 | None | ERR9119882 | MDR-TB | lineage2.2.2 | None | ERR9907788 | MDR-TB | lineage4.3.2 | None | ERR9787205 | Other | lineage6 | None | ERR987774 | MDR-TB | lineage3.1.1 | None | ERR9787308 | Other | lineage6 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992878 | MDR-TB | lineage4.4.1.1 | None | ERR9993176 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR10315577 | Sensitive | lineage1.1.3.2 | None | SRR10315613 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR1049633 | Sensitive | lineage4 | None | SRR1049634 | Sensitive | lineage4 | None | SRR1049715 | Sensitive | lineage4.8 | None | SRR1049716 | Sensitive | lineage4.8 | None | SRR1140590 | Sensitive | lineage4.8 | None | SRR1062904 | Sensitive | lineage4.8 | None | SRR10869181 | Pre-XDR-TB | lineage2.2.2 | None | SRR1062923 | Sensitive | lineage4.8 | None | SRR1140592 | Sensitive | lineage4.8 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR11567796 | Pre-XDR-TB | lineage2.2.1 | None | SRR11871441 | Pre-XDR-TB | lineage2.2.1 | None | SRR11828991 | Pre-XDR-TB | lineage2.1 | None | SRR11871438 | Pre-XDR-TB | lineage2.2.1 | None | SRR11871445 | Pre-XDR-TB | lineage2.2.1 | None | SRR11871430 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972321 | MDR-TB | lineage2.2.1.1 | None | SRR12882242 | Sensitive | lineage1.1.3.2 | None | SRR12830369 | Sensitive | lineage4.4.1.1 | None | SRR12882486 | Sensitive | lineage1.1.3.2 | None | SRR12882574 | Sensitive | lineage1.1.3.2 | None |
|---|
