Rv0001 - c.1041G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
2 Sensitive
0 RR-TB
12 HR-TB
7 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.8 | 4 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 2 |
| 14 | |
| lineage4.9 | 14 |
| lineage3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| lineage6 | 1 |
| lineage2.1;lineage4.9 | 10 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage2.2.1 | 4 |
| lineage4.9;lineage6.3 | 3 |
| lineage4.1.2.1 | 5 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4 | 1 |
| lineage4.7 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.4.1.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| La3;lineage4.9 | 2 |
| lineage4.6.1 | 1 |
| lineage6.3.1 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR12015083 | Other | lineage4.8 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4816999 | Other | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR4817893 | Other | lineage4.8 | None | ERR9787165 | Other | lineage6 | None | SRR1165699 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR7496472 | Other | lineage4.9 | None | ERR9787197 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4407463 | HR-TB | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9117721 | HR-TB | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR9117709 | Other | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4817735 | Other | lineage4.8 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR161037 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046485 | Other | lineage4.9 | None | SRR25827682 | Other | None | ERR9786671 | Other | None | SRR6045555 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3797069 | Other | lineage4.9 | None | SRR7496517 | Other | None | ERR4819322 | Other | lineage1.1;lineage4 | None |
|---|
