lineage | Count |
---|---|
lineage4.1.1 | 1 |
80 | |
lineage2.2.1 | 7 |
lineage4 | 14 |
lineage2.1 | 1 |
lineage4.8 | 2 |
lineage2.2 | 2 |
La1.8.1 | 1 |
lineage4.9 | 23 |
lineage4;lineage1.1 | 1 |
lineage4.1.2.1 | 8 |
lineage4.7 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4;lineage3.1 | 1 |
lineage2 | 4 |
lineage3 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.2 | 1 |
lineage4.3.2 | 1 |
lineage6.3.1 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage3.1 | 2 |
lineage4.3.3 | 1 |
lineage4.2.1 | 1 |
lineage4.5 | 1 |
lineage4.9;La3 | 1 |
lineage4;lineage2.2 | 1 |
lineage6.3;lineage2.2.1 | 1 |
spoligotype | Count |
---|---|
None | 162 |
ID | Drug resistance | Lineage | Country iso2 | ERR176793 | Other | lineage4.1.1 | None | SRR3675488 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3742665 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4816999 | Other | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | SRR3675222 | Other | None | SRR3675270 | HR-TB | None | SRR3675311 | Other | None | ERR2027263 | Other | lineage4 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4816585 | Other | lineage2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR234659 | HR-TB | None | ERR4818394 | Other | lineage4.9 | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341302 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | SRR6045526 | HR-TB | None | SRR5341333 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341315 | Sensitive | None | ERR4822003 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6045053 | Other | None | SRR6044855 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046046 | Other | None | SRR6789626 | Other | None | SRR6046305 | Other | lineage4.9 | None | ERR4830353 | Other | None | SRR6046540 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR7496509 | Other | None | ERR502532 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR11466044 | Other | lineage4.1.1.3 | None | SRR7535086 | Other | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR1063859 | HR-TB | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR3283027 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR5336148 | Other | None | ERR4407463 | HR-TB | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769452 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769450 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR9117709 | HR-TB | None | ERR736867 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR736874 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | SRR1172234 | Other | None | SRR1169194 | Other | None | SRR1173153 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173400 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1175074 | MDR-TB | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175090 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1196546 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR8692790 | RR-TB | lineage4 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692887 | Other | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None |
---|