Rv3805c - c.-406C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
3 RR-TB
24 HR-TB
2 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 18 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 5 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 14 | |
| lineage4.1.3 | 2 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 5 |
| lineage2.2.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.1.2.1 | 5 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.3.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 2 |
| lineage4.3.4 | 1 |
| lineage4.9;lineage6.3 | 3 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
| lineage2.1 | 1 |
| lineage1.1.3.1 | 1 |
| La3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| La1.7;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 87 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173778 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR736848 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR4811075 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR161037 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR28119753 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR7535086 | Other | None | SRR1165699 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR1173400 | Other | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1169194 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4817735 | Other | lineage4.8 | None | SRR6789626 | Other | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4811105 | HR-TB | None | ERR4811142 | RR-TB | None | ERR4811311 | Other | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1172817 | Other | La3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR234659 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None |
|---|
