Rv0001 - c.1014C>G


Drug resistance types
1 Sensitive 3 RR-TB 38 HR-TB 11 MDR-TB 2 Pre-XDR-TB 1 XDR-TB 96 Other
lineage Counts
lineage Count
lineage4.9 33
La1.2.BCG 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
15
lineage2.2.1 7
lineage4.1.1.1 2
lineage2.1;lineage4.9 14
lineage2.1;lineage4.9;lineage6.3 9
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage3.1;lineage9 1
lineage4.9;lineage6.3 6
La3;M.canetti;lineage2.2.1 1
lineage4.8 1
La2;lineage2.2 1
M.canetti;lineage2.1;lineage4.9 2
lineage4.7 1
lineage2.1;lineage6.3 2
La2;lineage4.9 1
lineage4 2
lineage1;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
La3 2
lineage4.3.4.1 1
lineage4.1.3 2
La3;lineage4.9 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.4.1.1 1
lineage4.6.2.2 1
lineage4.1.2.1 3
lineage2.1 2
lineage4.3.4.2.1 1
lineage2.1;lineage4.9;lineage7 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.9;lineage7 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.2.2 1
lineage3.1.1 1
lineage4.9;lineage9 1
lineage4.3.2 1
lineage5.2 2
M.canetti;lineage2.1;lineage6.3 1
lineage6.1.3 1
La3;lineage2.1;lineage6.3 1
La3;lineage4.8 2
lineage4.3.4 1
La3;lineage2 1
lineage6.3.1 1
La3;lineage2.1;lineage4.9 1
lineage3 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage1.2.2.2 1
La1.7.1;lineage4.9 1
lineage4.8.1 1
lineage3.1 1
spoligotype Counts
spoligotype Count
None 152
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6046485 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR3797070 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR234659 Other None
ERR4814352 Other lineage2.2.1 None
SRR3675572 Other None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR18213713 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR4817735 Other lineage4.8 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR181887 Other lineage4.9 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR4769521 RR-TB lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR1063862 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR9117709 Other None
ERR9786611 HR-TB lineage4.1.3 None
SRR29017461 Other La3;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR7496472 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR4819781 Other lineage2.2.1 None
ERR736875 HR-TB lineage4.9 None
SRR1173633 Other lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR1196583 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR387051 Other lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR3797069 Other lineage4.9 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
SRR1173355 Other lineage4.9 None
SRR7496517 Other None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR6046133 HR-TB lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR1196474 Other lineage3.1.1 None
SRR1196546 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR176793 Other lineage4.1.1.1 None
ERR9117805 Other lineage4.3.2 None
ERR3283044 Other lineage4 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR1063849 HR-TB lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR473332 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR1184381 MDR-TB None
SRR3675221 Other lineage4.9 None
SRR25827682 Other None
SRR6789621 Other lineage4.9 None
SRR28119752 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
ERR9786671 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR176778 HR-TB lineage4.9 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR6045555 Other lineage4.9 None
ERR9786604 Other None
SRR6046382 Sensitive lineage2.2.1 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR9787165 Other lineage6.1.3 None
SRR1173778 Other lineage4.9 None
ERR176651 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
ERR736817 HR-TB lineage4.3.4 None
SRR20969677 HR-TB La3;lineage2 None
ERR9787139 Other lineage6.3.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4816999 Other None
SRR6045219 HR-TB lineage4.9 None
SRR6789626 Other None
ERR4797588 MDR-TB lineage3 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR3675236 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR7496509 Other None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR12015083 Other La3;lineage4.8 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1184346 HR-TB lineage3.1 None