Rv3862c - c.297delC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
145 Sensitive
1 RR-TB
15 HR-TB
26 MDR-TB
5 Pre-XDR-TB
1 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.2 | 185 |
| lineage1.1.2;lineage2.2.1.1 | 1 |
| lineage1.1.2;lineage1.1.3.3 | 5 |
| lineage3 | 1 |
| 1 | |
| lineage1.1.2;lineage2.2.1;lineage3 | 1 |
| lineage1.1.2;lineage2 | 1 |
| lineage1.1.2;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 196 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4814993 | Sensitive | lineage1.1.2 | gb | ERR4815020 | HR-TB | lineage1.1.2 | gb | SRR6046531 | Sensitive | lineage1.1.2 | gb | SRR1173047 | Sensitive | lineage1.1.2 | None | SRR11348167 | Sensitive | lineage1.1.2 | None | SRR11348154 | RR-TB | lineage1.1.2 | None | ERR234185 | Sensitive | lineage1.1.2 | None | SRR1173656 | Sensitive | lineage1.1.2 | None | SRR1173183 | Sensitive | lineage1.1.2 | None | ERR4800668 | MDR-TB | lineage1.1.2 | None | SRR25340917 | Sensitive | lineage1.1.2 | None | SRR27450017 | Sensitive | lineage1.1.2 | None | ERR13266535 | Sensitive | lineage1.1.2 | None | SRR1172848 | MDR-TB | lineage1.1.2 | None | SRR21733123 | Sensitive | lineage1.1.2 | None | SRR25340846 | Sensitive | lineage1.1.2 | None | ERR13291609 | HR-TB | lineage1.1.2 | None | ERR028333 | Sensitive | lineage1.1.2 | None | ERR4821634 | Sensitive | lineage1.1.2 | None | SRR10321150 | Sensitive | lineage1.1.2 | None | SRR10321148 | Sensitive | lineage1.1.2 | None | SRR10321146 | Sensitive | lineage1.1.2 | None | SRR15014666 | Pre-XDR-TB | lineage1.1.2 | None | SRR15014670 | MDR-TB | lineage1.1.2 | None | SRR15014671 | MDR-TB | lineage1.1.2 | None | SRR1173061 | Sensitive | lineage1.1.2 | None | SRR16058477 | Sensitive | lineage1.1.2 | None | SRR16097554 | HR-TB | lineage1.1.2 | None | SRR28046086 | Sensitive | lineage1.1.2 | None | SRR29772433 | MDR-TB | lineage1.1.2 | None | ERR11049876 | Sensitive | lineage1.1.2 | None | ERR13289581 | Sensitive | lineage1.1.2 | None | SRR1175123 | Sensitive | lineage1.1.2 | None | SRR29440709 | Sensitive | lineage1.1.2 | None | ERR13290212 | Sensitive | lineage1.1.2 | None | ERR13290864 | Sensitive | lineage1.1.2 | None | SRR21732179 | Sensitive | lineage1.1.2 | None | SRR29231144 | Sensitive | lineage1.1.2 | None | ERR13289730 | Sensitive | lineage1.1.2 | None | SAMN02599075 | Sensitive | lineage1.1.2 | None | SAMN02599140 | Sensitive | lineage1.1.2 | None | SAMN02599179 | MDR-TB | lineage1.1.2 | None | ERR13261526 | Sensitive | lineage1.1.2 | None | SRR29772712 | MDR-TB | lineage1.1.2 | None | SRR7069926 | HR-TB | lineage1.1.2 | None | SRR29230963 | Sensitive | lineage1.1.2 | None | SRR29772565 | MDR-TB | lineage1.1.2 | None | SRR28045901 | Sensitive | lineage1.1.2 | None | SRR10321139 | HR-TB | lineage1.1.2 | None | SRR21732075 | Sensitive | lineage1.1.2 | None | SRR15014662 | MDR-TB | lineage1.1.2 | None | ERR11050918 | Sensitive | lineage1.1.2 | None | SRR25340791 | Sensitive | lineage1.1.2 | None | ERR13289517 | Sensitive | lineage1.1.2 | None | ERR4798664 | Sensitive | lineage1.1.2 | in | ERR4798908 | Sensitive | lineage1.1.2 | in | SRR28868383 | Sensitive | lineage1.1.2 | None | ERR2512799 | Sensitive | lineage1.1.2 | None | ERR4800200 | Sensitive | lineage1.1.2 | in | SRR29772466 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1.1 | None | ERR4799205 | Other | lineage1.1.2 | in | ERR4798222 | Sensitive | lineage1.1.2 | in | SRR1173288 | Sensitive | lineage1.1.2 | None | SRR1173013 | Sensitive | lineage1.1.2 | None | SRR8380906 | Sensitive | lineage1.1.2 | in | SAMN02599148 | HR-TB | lineage1.1.2 | in | SAMN02599125 | Sensitive | lineage1.1.2 | in | SAMN02599047 | Sensitive | lineage1.1.2;lineage1.1.3.3 | in | SRR1172950 | Sensitive | lineage1.1.2 | None | SAMN02599124 | Sensitive | lineage1.1.2 | in | SRR1173127 | Sensitive | lineage1.1.2 | None | SRR1169513 | Sensitive | lineage1.1.2;lineage1.1.3.3 | None | SRR10321140 | Sensitive | lineage1.1.2 | None | SRR1172873 | MDR-TB | lineage1.1.2 | None | SRR10726048 | Sensitive | lineage1.1.2 | None | SRR28044836 | Sensitive | lineage1.1.2 | None | ERR551606 | Sensitive | lineage1.1.2 | de | SRR3675361 | Sensitive | lineage1.1.2 | gb | ERR2516786 | MDR-TB | lineage1.1.2 | gb | ERR4814828 | HR-TB | lineage1.1.2 | gb | ERR2513429 | Sensitive | lineage1.1.2 | gb | SRR6046081 | Sensitive | lineage1.1.2 | gb | ERR4796400 | Sensitive | lineage1.1.2 | None | SRR10321136 | Sensitive | lineage1.1.2 | None | SRR29772403 | Pre-XDR-TB | lineage1.1.2 | None | SRR28045875 | Sensitive | lineage1.1.2 | None | ERR13290235 | Sensitive | lineage1.1.2 | None | SRR29230875 | Sensitive | lineage1.1.2 | None | SRR28045473 | Sensitive | lineage1.1.2 | None | SRR27450417 | Sensitive | lineage1.1.2 | None | SRR1173008 | Sensitive | lineage1.1.2 | None | SRR17856678 | Sensitive | lineage1.1.2 | None | SRR25340977 | Sensitive | lineage1.1.2 | None | ERR3132084 | MDR-TB | lineage1.1.2 | None | ERR9125811 | HR-TB | lineage1.1.2 | None | SRR15014631 | MDR-TB | lineage1.1.2 | None | SRR15014639 | MDR-TB | lineage1.1.2 | None | SRR15014642 | MDR-TB | lineage1.1.2 | None | SRR15014657 | MDR-TB | lineage1.1.2 | None | SRR15014663 | MDR-TB | lineage1.1.2 | None | SRR15014696 | MDR-TB | lineage1.1.2 | None | SRR15014720 | Pre-XDR-TB | lineage1.1.2 | None | SRR16058102 | HR-TB | lineage1.1.2 | None | SRR27450016 | Sensitive | lineage1.1.2 | None | ERR3275715 | Sensitive | lineage1.1.2 | nl | SRR5341221 | Sensitive | lineage1.1.2 | None | SRR25827797 | HR-TB | lineage1.1.2 | None | SRR22048521 | Sensitive | lineage1.1.2 | None | SRR1175089 | Sensitive | lineage1.1.2 | None | SRR1172799 | Sensitive | lineage1.1.2 | None | SRR18149495 | Sensitive | lineage1.1.2 | None | SRR17333994 | Sensitive | lineage1.1.2 | None | SRR30182795 | Sensitive | lineage1.1.2 | None | SRR1172813 | Sensitive | lineage1.1.2 | None | SRR1173694 | Sensitive | lineage1.1.2 | None | ERR4817858 | Sensitive | lineage1.1.2 | None | SRR25827590 | HR-TB | lineage1.1.2 | None | SRR29772610 | HR-TB | lineage1.1.2 | None | ERR11067866 | Sensitive | lineage1.1.2 | None | SRR29772799 | Sensitive | lineage1.1.2 | None | SAMN02599088 | Sensitive | lineage1.1.2 | None | SAMN02599094 | Sensitive | lineage1.1.2 | None | SRR1180447 | Sensitive | lineage1.1.2;lineage1.1.3.3 | None | ERR9657206 | Sensitive | lineage1.1.2 | None | SRR29772578 | MDR-TB | lineage1.1.2 | None | SRR29230865 | Sensitive | lineage1.1.2 | None | SRR22251328 | Sensitive | lineage1.1.2 | None | SRR1173117 | Sensitive | lineage1.1.2 | None | SRR11348155 | Sensitive | lineage1.1.2 | None | SRR29017603 | MDR-TB | lineage3 | None | SRR25340865 | Sensitive | lineage1.1.2 | None | SRR28868753 | Sensitive | lineage1.1.2 | None | SRR6045462 | Sensitive | lineage1.1.2 | None | SRR22249823 | Sensitive | lineage1.1.2 | None | SRR1173005 | HR-TB | lineage1.1.2 | None | SRR11972375 | Sensitive | lineage1.1.2 | None | SRR28868834 | Sensitive | lineage1.1.2 | None | ERR4796603 | Sensitive | lineage1.1.2 | in | SRR21689722 | Sensitive | lineage1.1.2 | None | SAMN02599152 | Sensitive | lineage1.1.2 | in | SAMN02599134 | Sensitive | lineage1.1.2 | in | SAMN02599146 | Sensitive | lineage1.1.2 | in | SRR28045622 | Sensitive | lineage1.1.2 | None | ERR4553471 | MDR-TB | None | SRR28045853 | Sensitive | lineage1.1.2 | None | SRR28044674 | Sensitive | lineage1.1.2 | None | SRR1180320 | Sensitive | lineage1.1.2;lineage1.1.3.3 | None | SRR28045517 | Sensitive | lineage1.1.2 | None | SRR28045903 | Sensitive | lineage1.1.2 | None | SRR27450169 | Sensitive | lineage1.1.2 | None | SRR28044563 | Sensitive | lineage1.1.2 | None | ERR4818325 | Sensitive | lineage1.1.2 | gb | SRR1173035 | Sensitive | lineage1.1.2 | None | SRR27450391 | Sensitive | lineage1.1.2 | None | SRR28044862 | Sensitive | lineage1.1.2 | None | ERR13261302 | Sensitive | lineage1.1.2 | None | SRR29772827 | HR-TB | lineage1.1.2 | None | SRR1172855 | Sensitive | lineage1.1.2 | None | SRR1173388 | HR-TB | lineage1.1.2 | None | ERR11049840 | Sensitive | lineage1.1.2 | None | SRR28046295 | Sensitive | lineage1.1.2 | None | SRR10726041 | Sensitive | lineage1.1.2 | None | ERR4796695 | MDR-TB | lineage1.1.2 | in | SRR25340908 | Sensitive | lineage1.1.2 | None | ERR9125857 | Sensitive | lineage1.1.2 | None | ERR11050957 | Sensitive | lineage1.1.2 | None | SRR10321129 | Sensitive | lineage1.1.2 | None | SRR25340897 | Sensitive | lineage1.1.2 | None | SRR28045124 | Sensitive | lineage1.1.2 | None | SRR28045475 | Sensitive | lineage1.1.2 | None | SRR29440666 | Sensitive | lineage1.1.2 | None | ERR13266847 | Sensitive | lineage1.1.2 | None | SRR3675252 | Other | lineage1.1.2 | None | SRR22251705 | Sensitive | lineage1.1.2 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | SRR25340801 | Sensitive | lineage1.1.2 | None | ERR4817070 | Other | lineage1.1.2 | None | SRR29230768 | Sensitive | lineage1.1.2 | None | SRR29440669 | Sensitive | lineage1.1.2 | None | SRR28859703 | Sensitive | lineage1.1.2 | None | SRR29772675 | MDR-TB | lineage1.1.2 | None | SRR1172107 | Sensitive | lineage1.1.2;lineage1.1.3.3 | None | SRR17856650 | Sensitive | lineage1.1.2 | None | SRR1173287 | Sensitive | lineage1.1.2 | None | SRR15014774 | MDR-TB | lineage1.1.2 | None | SRR25827357 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3 | None | SRR28868476 | Sensitive | lineage1.1.2 | None | ERR4796826 | MDR-TB | lineage1.1.2 | in | ERR4797284 | Pre-XDR-TB | lineage1.1.2;lineage2 | in | ERR4799482 | Sensitive | lineage1.1.2 | in | SRR25340766 | Sensitive | lineage1.1.2;lineage3 | None | ERR4800502 | MDR-TB | lineage1.1.2 | in | SRR28045616 | Sensitive | lineage1.1.2 | None | SRR28045071 | Sensitive | lineage1.1.2 | None | SRR11972185 | Sensitive | lineage1.1.2 | None | SRR30182453 | Sensitive | lineage1.1.2 | None |
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