TB-Profiler result

Run: ERR3797084
Summary

Run ID: ERR3797084

Sample name:

Date: 01-04-2023 03:04:54

Number of reads: 9037

Percentage reads mapped: 1.24

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761615 c.1809A>G synonymous_variant 1.0
rpoC 762896 c.-474G>C upstream_gene_variant 1.0
rpoC 762917 c.-453C>G upstream_gene_variant 0.67
rpoC 762923 c.-447C>G upstream_gene_variant 0.67
rpoB 762925 p.Thr1040Ile missense_variant 0.67
rpoC 762929 c.-441G>C upstream_gene_variant 0.67
rpoB 762939 p.Met1045Leu missense_variant 0.67
rpoB 762942 p.Ile1046Val missense_variant 0.67
rpoC 762965 c.-405T>C upstream_gene_variant 1.0
rpoC 762980 c.-390T>C upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoC 763013 c.-357C>G upstream_gene_variant 1.0
rpoB 763014 p.Met1070Leu missense_variant 1.0
rpoB 763017 p.Gln1071Glu missense_variant 1.0
rpoC 763028 c.-342T>C upstream_gene_variant 1.0
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763040 c.-330C>G upstream_gene_variant 1.0
rpoC 764389 p.Leu340Phe missense_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764410 c.1041G>C synonymous_variant 1.0
rpoC 764428 c.1059G>C synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066A>C synonymous_variant 1.0
rpoC 764446 p.Asp359Glu missense_variant 1.0
rpoC 764450 p.Gly361Arg missense_variant 1.0
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 p.Glu364Asp missense_variant 1.0
rpoC 764468 p.Val367Ile missense_variant 1.0
rpoC 764471 p.Asn368His missense_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764498 p.Ser377Ala missense_variant 1.0
rpoC 764503 c.1134G>C synonymous_variant 1.0
rpoC 764509 c.1140G>C synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 1.0
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 1.0
rrs 1472129 n.284G>A non_coding_transcript_exon_variant 1.0
rrs 1472135 n.290C>T non_coding_transcript_exon_variant 1.0
rrs 1472138 n.293C>T non_coding_transcript_exon_variant 1.0
rrs 1472147 n.302G>A non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 1.0
rrs 1472153 n.308G>A non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472214 n.369C>G non_coding_transcript_exon_variant 1.0
rrs 1472235 n.390G>C non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>C non_coding_transcript_exon_variant 1.0
rrs 1472242 n.397C>T non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 1.0
rrs 1472887 n.1042G>C non_coding_transcript_exon_variant 1.0
rrs 1472912 n.1067C>T non_coding_transcript_exon_variant 1.0
rrs 1472917 n.1072G>A non_coding_transcript_exon_variant 1.0
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 1.0
rrs 1472955 n.1111delT non_coding_transcript_exon_variant 1.0
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 1.0
rrs 1472960 n.1117dupT non_coding_transcript_exon_variant 1.0
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 1.0
rrs 1472987 n.1142G>C non_coding_transcript_exon_variant 1.0
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 1.0
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 1.0
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 1.0
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 1.0
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 1.0
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 1.0
rrl 1476336 n.2679C>G non_coding_transcript_exon_variant 1.0
rrl 1476356 n.2699C>G non_coding_transcript_exon_variant 0.95
rrl 1476357 n.2700T>A non_coding_transcript_exon_variant 0.95
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 1.0
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 1.0
rrl 1476384 n.2727G>C non_coding_transcript_exon_variant 0.96
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 1.0
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.97
rrl 1476428 n.2771C>A non_coding_transcript_exon_variant 1.0
rrl 1476443 n.2786G>C non_coding_transcript_exon_variant 0.96
rrl 1476455 n.2798C>G non_coding_transcript_exon_variant 0.96
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.91
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.96
rrl 1476470 n.2813C>T non_coding_transcript_exon_variant 0.77
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.88
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.86
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.67