Run ID: SRR6046609
Sample name:
Date: 04-04-2023 12:19:54
Number of reads: 11770
Percentage reads mapped: 1.73
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 1.0 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 1.0 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 1.0 |
rpoB | 762925 | p.Thr1040Ile | missense_variant | 1.0 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 1.0 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 1.0 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 1.0 |
rpoC | 762956 | c.-414G>C | upstream_gene_variant | 1.0 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 1.0 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 1.0 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 1.0 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 1.0 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 1.0 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 1.0 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 1.0 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 1.0 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 1.0 |
rpoC | 764665 | c.1296C>T | synonymous_variant | 1.0 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 1.0 |
rpoC | 764671 | c.1302G>C | synonymous_variant | 1.0 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 1.0 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 1.0 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 1.0 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 1.0 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 1.0 |