Run ID: SRR15368751
Sample name:
Date: 03-04-2023 13:47:26
Number of reads: 6973451
Percentage reads mapped: 45.8
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.12 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.1 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.98 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.99 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.97 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674645 | c.444C>T | synonymous_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.98 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.98 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448915 | p.Ser138Gly | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |