Run ID: ERR10796619
Sample name:
Date: 31-03-2023 11:12:38
Number of reads: 670924
Percentage reads mapped: 100.0
Strain: lineage4.3.3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
ethA | 4327426 | c.47delG | frameshift_variant | 0.12 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6378 | p.Val380Ala | missense_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7695 | p.Ala132Pro | missense_variant | 0.18 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576240 | p.Ala298Val | missense_variant | 0.33 |
rpoB | 761479 | p.Lys558Thr | missense_variant | 0.2 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765611 | p.His748Tyr | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472251 | n.406G>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472256 | n.411T>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472279 | n.434T>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472286 | n.441C>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472553 | n.708C>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472572 | n.727T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472574 | n.729T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472579 | n.734G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472582 | n.737G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472583 | n.738T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472584 | n.739A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472594 | n.749G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472836 | n.991G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473198 | n.1354delC | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473202 | n.1357C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475993 | n.2336C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476051 | n.2394G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.34 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102226 | p.Cys273Ser | missense_variant | 0.29 |
katG | 2155194 | c.918C>T | synonymous_variant | 0.14 |
PPE35 | 2169984 | p.Ala210Val | missense_variant | 0.17 |
Rv1979c | 2223211 | c.-47G>A | upstream_gene_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
pepQ | 2860213 | p.Pro69Leu | missense_variant | 0.25 |
Rv2752c | 3064609 | p.Arg528Leu | missense_variant | 0.5 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3086823 | p.Arg2Cys | missense_variant | 0.11 |
ald | 3087133 | p.Asp105Val | missense_variant | 0.2 |
fbiD | 3339051 | c.-67C>G | upstream_gene_variant | 0.6 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475312 | p.Pro436Thr | missense_variant | 0.4 |
fbiB | 3642348 | p.Pro272Thr | missense_variant | 0.4 |
rpoA | 3878358 | c.150C>T | synonymous_variant | 0.17 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4040447 | c.257delA | frameshift_variant | 0.12 |
embC | 4242182 | p.Ala774Ser | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247631 | p.Leu373Arg | missense_variant | 0.33 |
embB | 4247948 | p.Val479Leu | missense_variant | 0.4 |
aftB | 4268040 | p.Leu266Pro | missense_variant | 1.0 |
aftB | 4268619 | p.Val73Gly | missense_variant | 0.14 |
ubiA | 4269400 | p.Gln145Arg | missense_variant | 0.11 |
ethA | 4326977 | p.His166Leu | missense_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |